View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13869_low_2 (Length: 817)

Name: NF13869_low_2
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13869_low_2
NF13869_low_2
[»] chr3 (1 HSPs)
chr3 (80-802)||(30895982-30896703)


Alignment Details
Target: chr3 (Bit Score: 707; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 80 - 802
Target Start/End: Complemental strand, 30896703 - 30895982
Alignment:
Q  80 tatctcaatgaatttctcacttaattaaaatggaaatgaaacactcaatgcaaatttcatcattttatcaaatagtaaatgagcataacaacagaaactc 179  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30896703 tatctcaatgagtttctcacttaattaaaatggaaatgaaacactcaatgcaaatttcatcattttatcaaatagtaaatgagcataacaacacaaactc 30896604  T
Q  180 aacaaattaattgaaaatggtaaaataccagatatagccatggcaaatccacaaccaccaccagaaacatccttccagttataaccaccagatgtagccg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30896603 aacaaattaattgaaaatggtaaaataccagatatagccatggcaaatccacaaccaccaccagaaacatccttccagttataaccaccagatgtagccg 30896504  T
Q  280 gaaccctaacaagtaccggcgtcaataacggcgtcctttgcggtaaagctcccggtaaataaccccacatgtataccattttctccttcacttcacaccc 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30896503 gaaccctaacaagtaccggcgtcaataacggcgtcctttgcggtaaagctcccggtaaataaccccacatgtataccattttctccttcacttcacaccc 30896404  T
Q  380 tccaccattcatgattactacgattttcccaccaaaaacacaaaacccaatgcagttaatttcaaaactgtttttgtggcggtttctgataaaaaacttt 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30896403 tccaccattcatgattactacgattttcccaccaaaaacacaaaacccaatgcagttaatttcaaaactgtttttgtggcggtttctgata-aaaacttt 30896305  T
Q  480 gaagagtgaaagaaacaattgacctaaatgcgttgtcttcgttgcttcgttaaaaagagggtgtatcattttcactgggatgcgtgcgccacgtaggatt 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30896304 gaagagtgaaagaaacaattgacctaaatgcgttgtcttcgttgcttcgttaaaaagagggtgtatcattttcactgggatgcgtgcgccacgtaggatt 30896205  T
Q  580 ctcacgtggttcaactaacacgtggcgtgatgtaagccgttattttcttcgttgatttgtagccacgaattttaaagaagtttctggaatgtaggaaaag 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30896204 ctcacgtggttcaactaacacgtggcgtgatgtaagccgttattttcttcgttgatttgtagccacgaattttaaagaagtttctggaatgtaggaaaag 30896105  T
Q  680 tccaaatattctagggccgtgtgcattaagagcacctacgtggggcttatttttgctgccacgtgttgtttggtccttcaacaacaatcattaagcttta 779  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30896104 tccaaatattctagggccgtgtgcattaagagcacctacgtggggcttatttttgctgccacgtgttgtttggtccttcaacaacaatcattaagcttta 30896005  T
Q  780 atacggtttggcacgtcattgat 802  Q
    |||||||||||||||||||||||    
T  30896004 atacggtttggcacgtcattgat 30895982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University