View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_22 (Length: 430)
Name: NF13869_low_22
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 5687419 - 5687839
Alignment:
| Q |
1 |
atatattatgatttatgacataaacacttgcataagtgtttggaaaacttaatagattttcttttttcataattctatttcatatatgttgctttgttaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5687419 |
atatattatgatttatgacataaaca-ttgcataagtgtttggaaaacttaatagattttcttttttcataattctatttcatatatgtagctttgttaa |
5687517 |
T |
|
| Q |
101 |
tgatgtttctgcaccaatattttaaaatatgacaaaggagtgacctaaacattcaaatatatggtacacaatgtgaatctaacactgcttgattctatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687518 |
tgatgtttctgcaccaatattttaaaatatgacaaaggagtgacctaaacattcaaatatatggtacacaatgtgaatctaacactgcttgattctatag |
5687617 |
T |
|
| Q |
201 |
ttgaaatgtatcttcttgtaccaaaactgtgaaagacgtttcctcaaagaattaaatagataaacaacatccaagtccacatgactctggatcttgtcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687618 |
ttgaaatgtatcttcttgtaccaaaactgtgaaagacgtttcctcaaagaattaaatagataaacaacatccaagtccacatgactctggatcttgtcta |
5687717 |
T |
|
| Q |
301 |
atctcttcttcattcactaatccatatctcgccttaggtggtgtaaataatacatggtcaaattacagag--atatgacccacatcaattcaatttttgc |
398 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5687718 |
atc---tcttcattcactaatccatatcacgccttaggtggtgtaaataatacatggtcaaattacagagatatatgacccacatcaattcaatttttgc |
5687814 |
T |
|
| Q |
399 |
tctatttgttaatccttagtataat |
423 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
5687815 |
tctatttgttaatccttattataat |
5687839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 41117641 - 41117681
Alignment:
| Q |
82 |
atatatgttgctttgttaatgatgtttctgcaccaatattt |
122 |
Q |
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|||||||| | || ||||||||||||||||||||||||||| |
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| T |
41117641 |
atatatgtcgattggttaatgatgtttctgcaccaatattt |
41117681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 40350026 - 40349951
Alignment:
| Q |
83 |
tatatgttgctttgttaatgatgtttctgcaccaatattttaaaatatgacaaaggagtgacctaaacattcaaat |
158 |
Q |
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||||||||| |||| ||||||||||| |||| |||| ||| ||||| || ||||||||| | || ||||||||||| |
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| T |
40350026 |
tatatgttgatttgctaatgatgtttttgcatcaatgtttaaaaatctggcaaaggagtaatcttaacattcaaat |
40349951 |
T |
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