View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_25 (Length: 368)
Name: NF13869_low_25
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_25 |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 38258381 - 38258041
Alignment:
| Q |
18 |
accttagtgcttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaataggtcaagttcttgttccctcatggttttaaatgaat |
117 |
Q |
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| T |
38258381 |
accttggtgcttaaatcaacctttgttctatcattggtcttttctcttaaaaactttatcaataggtcaagttcttgttccctcatggttttaaatgaat |
38258282 |
T |
|
| Q |
118 |
ttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaaccatattcaccaaaactcaagttcctccgatcccaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38258281 |
ttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaaccatattcaccaaaactcaagttcctccgatcccaacc |
38258182 |
T |
|
| Q |
218 |
gatgat-ttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagttcagcagcttgaggtgaagaaacaactatggt |
316 |
Q |
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| T |
38258181 |
gatgattttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagttcagctgcttgaggtgaagaaacaactatgat |
38258082 |
T |
|
| Q |
317 |
tggtactaaacctaaacgtaagtgcataattggtccatatt |
357 |
Q |
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| T |
38258081 |
tggtactaaacctaaacgtaagtgcataattggtccatatt |
38258041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 27 - 357
Target Start/End: Complemental strand, 38262122 - 38261798
Alignment:
| Q |
27 |
cttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttg |
126 |
Q |
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||||||||||||||||||| ||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38262122 |
cttaaatcaacctttgttccgtcattagctttt------agaaacattatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttg |
38262029 |
T |
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| Q |
127 |
catggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaaccatattcaccaaaactcaagttcctccgatcccaaccgatgatttt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||| |
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| T |
38262028 |
catggctcaacaattctaaagtgcacatttttctcatatttcgccaataagaaccatattcaccaaaactcaagttcctctggtcccaagagattatttt |
38261929 |
T |
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| Q |
227 |
tgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagttcagcagcttgaggtgaagaaacaactatggttggtactaaa |
326 |
Q |
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| T |
38261928 |
tgctgccaaatgaggtggtctacttgcaaagacaagatcatgagttttgaggaaaagttcagctgcttgaggtgatgaaacaactatggttggtattaaa |
38261829 |
T |
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| Q |
327 |
cctaaacgtaagtgcataattggtccatatt |
357 |
Q |
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| T |
38261828 |
cctaagcgtaagtgcatgattggtccatatt |
38261798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 27 - 357
Target Start/End: Complemental strand, 27412162 - 27411832
Alignment:
| Q |
27 |
cttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttg |
126 |
Q |
| |
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|||| ||||||| |||||| |||||||||| |||||||| |||||| |||||||||||||| |||||||||||||| || |||| || ||||||| |
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| T |
27412162 |
cttatatcaaccgttgttccatcattggctgcttctcttataaacttgatcaataggtcaagctcttgttccctcatacttctaaaactgttgatttttg |
27412063 |
T |
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| Q |
127 |
catggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaaccatattcaccaaaactcaagttcctccgatcccaaccgatgatttt |
226 |
Q |
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|||||||||||||||||| |||||||| || | ||||||||||||||| ||||| ||| ||| || |||| | | || ||| || |||| || |
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| T |
27412062 |
tatggctcaacaattctaatgtgcacatcttgcgcatgtttcgccaatacgaaccgtatacactgaagctcacatccttctgattgtaaaacatgagttg |
27411963 |
T |
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| Q |
227 |
tgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagttcagcagcttgaggtgaagaaacaactatggttggtactaaa |
326 |
Q |
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|||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27411962 |
tgctgcctcaataggtggtctacttgcaaagacaatatcatgagtcttgaggaagagttcagcagcttgaggtgaagaaacaactatggttggtactaaa |
27411863 |
T |
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| Q |
327 |
cctaaacgtaagtgcataattggtccatatt |
357 |
Q |
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||||| || |||||||| ||||||||||||| |
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| T |
27411862 |
cctaagcgcaagtgcattattggtccatatt |
27411832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 27 - 357
Target Start/End: Original strand, 8520 - 8850
Alignment:
| Q |
27 |
cttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttg |
126 |
Q |
| |
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|||| ||||||| |||||| |||||||||| |||||||| |||||| |||||||||||||| |||||||||||||| || |||| || ||||||| |
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| T |
8520 |
cttatatcaaccgttgttccatcattggctgcttctcttataaacttgatcaataggtcaagctcttgttccctcataattctaaaactgttgatttttg |
8619 |
T |
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| Q |
127 |
catggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaaccatattcaccaaaactcaagttcctccgatcccaaccgatgatttt |
226 |
Q |
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|||||||||||||||||| |||||||| || | ||||||||||||||| ||||| ||| ||| || || | | | || ||| || |||| || |
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| T |
8620 |
aatggctcaacaattctaatgtgcacatcttgcgcatgtttcgccaatatgaaccgtatacactgaagctaacatccttctgattataaaacatgaatta |
8719 |
T |
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| Q |
227 |
tgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagttcagcagcttgaggtgaagaaacaactatggttggtactaaa |
326 |
Q |
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| |||||||||| |||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8720 |
tactgcctcaataggtggtctacttgcaaagacaaaatcatgagtcttgagaaagagttcagcagcttgaggtgaagaaacaactatggttggtactaaa |
8819 |
T |
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| Q |
327 |
cctaaacgtaagtgcataattggtccatatt |
357 |
Q |
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||||| || |||||||| ||||||||||||| |
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| T |
8820 |
cctaagcgcaagtgcatgattggtccatatt |
8850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 27 - 357
Target Start/End: Complemental strand, 4959 - 4631
Alignment:
| Q |
27 |
cttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttg |
126 |
Q |
| |
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|||| ||||||| |||||| |||||||||| |||| | | |||||| |||||||||||||| || ||| ||||||| || |||| ||| ||||||| |
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| T |
4959 |
cttatatcaaccgttgttccatcattggctgcttctttcataaacttgatcaataggtcaagctc--gtttcctcatgcttctaaaactattgatttttg |
4862 |
T |
|
| Q |
127 |
catggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaaccatattcaccaaaactcaagttcctccgatcccaaccgatgatttt |
226 |
Q |
| |
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|||||||||||||||||| |||||||| || ||||||||||||||||||||| ||| ||| ||||||| | || ||| || |||| ||| |
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| T |
4861 |
aatggctcaacaattctaacgtgcacatcttgtgcatgtttcgccaataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttt |
4762 |
T |
|
| Q |
227 |
tgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagttcagcagcttgaggtgaagaaacaactatggttggtactaaa |
326 |
Q |
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| |||||||| |||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761 |
tcctgcctcagaaggtggtctactagcaaagagaagatcatgagtcttgaggaagagttcagcagcttgaggtgaagaaacaactatggttggtactaaa |
4662 |
T |
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| Q |
327 |
cctaaacgtaagtgcataattggtccatatt |
357 |
Q |
| |
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||||| || |||||||| ||||||||||||| |
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| T |
4661 |
cctaagcgcaagtgcatgattggtccatatt |
4631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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