View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13869_low_29 (Length: 341)

Name: NF13869_low_29
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13869_low_29
NF13869_low_29
[»] chr6 (13 HSPs)
chr6 (13-325)||(27594382-27594694)
chr6 (132-325)||(27726026-27726219)
chr6 (143-325)||(27614019-27614204)
chr6 (160-325)||(27707117-27707286)
chr6 (150-325)||(27533088-27533267)
chr6 (155-325)||(27692356-27692531)
chr6 (18-95)||(27692269-27692346)
chr6 (18-92)||(27585727-27585799)
chr6 (218-315)||(26801178-26801276)
chr6 (54-95)||(27533041-27533082)
chr6 (18-82)||(27612762-27612827)
chr6 (139-186)||(26801273-26801320)
chr6 (60-90)||(27707087-27707117)
[»] scaffold0349 (1 HSPs)
scaffold0349 (132-325)||(4604-4798)
[»] chr8 (1 HSPs)
chr8 (135-204)||(29262775-29262841)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 27594382 - 27594694
Alignment:
Q  13 ataaacacccacccaccactctgccccctgtcacatatgcacatggcagtaggcatgtcacaaattttggcatctttttcatatgctacaatataaaggt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27594382 ataaacacccacccaccactctgccccctgtcacatatgcacatggcagtaggcatgtcacaaattttggcatctttttcatatgctacaatataaaggt 27594481  T
Q  113 catcagaacttctaaccatatccatataaaaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataag 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27594482 catcaaaacttctaaccatatccatataaaaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataag 27594581  T
Q  213 gaaaatttgcatttcaaatatcatcaaatgacatgttaattgagtctcacatttgctttaactttgcttccaacagtagtagtatcaacaggacccggat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27594582 gaaaatttgcatttcaaatatcatcaaatgacatgttaattgagtctcacatttgctttaactttgcttccaacagtagtagtatcaacaggacccggat 27594681  T
Q  313 tccgtgcattaat 325  Q
    |||||||||||||    
T  27594682 tccgtgcattaat 27594694  T

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Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 132 - 325
Target Start/End: Original strand, 27726026 - 27726219
Alignment:
Q  132 atccatataaaaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataaggaaaatttgcatttcaaat 231  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27726026 atccatacaaaaataaacaaaatgaagctccattacaccatcaagatgcattttggttacttctaaccaaagaaaaacaaggaaaatttgcatttcaaat 27726125  T
Q  232 atcatcaaatgacatgttaattgagtctcacatttgctttaactttgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 325  Q
    |||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27726126 atcatcaaatgacatgttaattgagtcttacatttgctaatactttgcttccaacagtagtagtatcaacaggacctggattccgtgcattaat 27726219  T

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Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 143 - 325
Target Start/End: Original strand, 27614019 - 27614204
Alignment:
Q  143 aataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaa--ataaggaaaatttgcatttcaaatatcatcaaa 240  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||| |||||||||||||||||||    
T  27614019 aataaacaaaatgaagcttcattacaccatcaagatacattttggttacttctaaccaaagaaaaacaaaaggcaaatttacatttcaaatatcatcaaa 27614118  T
Q  241 tgacatgttaattgagtctcacatttgctttaactt-tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 325  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  27614119 tgacatgttaattgagtctcacatttgctttaacttgtgcttccaacactagtagtatccgcaggacccggattccgtgcattaat 27614204  T

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Target: chr6; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 27707117 - 27707286
Alignment:
Q  160 tccattacaccatcaagatacattttggttacttctaaccaaagaaaaataa---ggaaaatttgcatttcaaatatcatcaaatgacatgttaattgag 256  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||    
T  27707117 tccattacaccatcaggatacattttggttacttctaaccaaagaaaaacaaaaaggaaaatttgcatttcaaatatcatcaaatgacatgttaattgag 27707216  T
Q  257 tctcacatttgctttaactt-tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 325  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27707217 tctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 27707286  T

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Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 150 - 325
Target Start/End: Original strand, 27533088 - 27533267
Alignment:
Q  150 aaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataa---ggaaaatttgcatttcaaatatcatcaaatgacat 246  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||  |||||    
T  27533088 aaaaagaagctccattacaccatcaggatacattttggttacttctaaccaaagaaaaacaaaatggaaaatttgcatttcaaatatcatcaatagacat 27533187  T
Q  247 gttaattgagtctcacatttgctttaactt-tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 325  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27533188 gttaattgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacgggacccggattccgtgcattaat 27533267  T

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Target: chr6; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 27692356 - 27692531
Alignment:
Q  155 gaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataa---ggaaaattt-gcatttcaaatatcatcaaatgacatgtta 250  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||   ||||||||| ||||||||||||||||||||||||||||||    
T  27692356 gaagctccattacaccatgaggatacattttggttacttctaaccaaagaaaaacaaaaaggaaaattttgcatttcaaatatcatcaaatgacatgtta 27692455  T
Q  251 attgagtctcacatttgctttaactt-tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 325  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692456 attgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 27692531  T

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Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 27692269 - 27692346
Alignment:
Q  18 cacccacccaccactctgccccctgtcacatatgcacatggcagtaggcatgtcacaaattttggcatctttttcata 95  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692269 cacccacccatcactctgccccctgtcatatatgcacatggcagtaggcatgtcacaaattttggcatctttttcata 27692346  T

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Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 27585727 - 27585799
Alignment:
Q  18 cacccacccaccactctgccccctgtcacatatgcacatggcagtaggcatgtcacaaattttggcatctttttc 92  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  27585727 cacccacccaccactctgccccctgtca--tatgcacatggcagtagtcatgtcacaaattttggcatctttttc 27585799  T

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Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 26801276 - 26801178
Alignment:
Q  218 tttgcatttcaaatatcatcaaatgacatgttaattgagtctcacatttgctttaactt-tgcttccaacagtagtagtatcaacaggacccggattcc 315  Q
    ||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||| || ||||| |||||||||||||||| || ||||| |||||||    
T  26801276 tttgcatttcaaatatcatcaaatgacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattcc 26801178  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 27533041 - 27533082
Alignment:
Q  54 catggcagtaggcatgtcacaaattttggcatctttttcata 95  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27533041 catggcagtaggcatgtcacaaattttggcatctttttcata 27533082  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 27612762 - 27612827
Alignment:
Q  18 cacccacccaccactctgccccctgtcacatatgcacatgg-cagtaggcatgtcacaaattttgg 82  Q
    |||||||||| ||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||    
T  27612762 cacccacccatcactctgccccatgtcatatatgctcatgggcagtaggcatgtcacaaattttgg 27612827  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 26801320 - 26801273
Alignment:
Q  139 taaaaataaacaaaatgaagctccattacaccatcaagatacattttg 186  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||||    
T  26801320 taaaaataaataaaatgaagctccattacaccactaagatacattttg 26801273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 27707087 - 27707117
Alignment:
Q  60 agtaggcatgtcacaaattttggcatctttt 90  Q
    |||||||||||||||||||||||||||||||    
T  27707087 agtaggcatgtcacaaattttggcatctttt 27707117  T

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Target: scaffold0349 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 132 - 325
Target Start/End: Original strand, 4604 - 4798
Alignment:
Q  132 atccatataaaaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataa-ggaaaatttgcatttcaaa 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  4604 atccatacaaaaataaacaaaatgaagctccattacaccatcaagatgcattttggttacttctaaccaaagaaaaacaaaggaaaatttgcatttcaaa 4703  T
Q  231 tatcatcaaatgacatgttaattgagtctcacatttgctttaactttgcttccaacagtagtagtatcaacaggacccggattccgtgcattaat 325  Q
    ||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4704 tatcatcaaatgacatgttaattgagtcttacatttgctaatactttgcttccaacagtagtagtatcaacaggacctggattccgtgcattaat 4798  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 29262775 - 29262841
Alignment:
Q  135 catataaaaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaaga 204  Q
    |||| |||||||||||||||||||||||||   ||||||||| |||||||||||||||| ||||||||||    
T  29262775 catacaaaaataaacaaaatgaagctccat---accatcaagttacattttggttacttttaaccaaaga 29262841  T

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