View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_30 (Length: 302)
Name: NF13869_low_30
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 19754600 - 19754334
Alignment:
| Q |
17 |
tggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatcccttttggaaaaagatgaacggcttaaaaa |
116 |
Q |
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| T |
19754600 |
tggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatcccttttggaaaaagatgaacggcttaaaaa |
19754501 |
T |
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| Q |
117 |
ggaagcaaatcttaccatcaggaaggtcgaaatttcaaagcggaaaaatgctgaaatagcaaaactaaaaaccgaaggagaccttcttgatgctaaattg |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19754500 |
ggaagcaaatcttaccatcaggaaggtcgaagattcaaagcggaaaaatgctgaaatagcaaaactaaaaactgaaggagaccttcttgatgctaaattg |
19754401 |
T |
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| Q |
217 |
gctcattcgaagactaatctcaacaagctcaaaaatgagtttaagatttagtatcatatgtactttg |
283 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
19754400 |
gctcattcgaagactaatctcaacaagctcaaaactgagtttaagatttagtaccatatgtactttg |
19754334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 22526691 - 22526433
Alignment:
| Q |
9 |
gaagaatatggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatcccttttggaaaaagatgaacgg |
108 |
Q |
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|||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||| | |
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| T |
22526691 |
gaagaaaatggaagagtacgaccttgccattttcgaacatgaaaaggcaattcaaaaattgaagtcgaacaaaaaatccctcttggaaaaatatgaaagt |
22526592 |
T |
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| Q |
109 |
cttaaaaaggaagcaaatcttaccatcaggaaggtcgaaatttcaaagcggaaaaatgctgaaatagcaaaactaaaaaccgaaggagaccttcttgatg |
208 |
Q |
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|||| ||||||||| |||||||||||| |||||||||| | | || ||| ||||||||| |||||||| | | | |||||| |||||||||||| |
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| T |
22526591 |
cttaggaaggaagcatatcttaccatcaagaaggtcgaagatgccaaacggctaaatgctgaggtagcaaaattgaccagcgaaggggaccttcttgata |
22526492 |
T |
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| Q |
209 |
ctaaattggctcattcgaagactaatctcaacaagctcaaaaatgagtttaagatttag |
267 |
Q |
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|| | | |||||||||| | |||||||||||||||| | |||||||||||||||| |
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| T |
22526491 |
acaagctagatcattcgaaggcaaatctcaacaagctcatagctgagtttaagatttag |
22526433 |
T |
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