View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13869_low_32 (Length: 295)

Name: NF13869_low_32
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13869_low_32
NF13869_low_32
[»] chr6 (27 HSPs)
chr6 (17-151)||(26059545-26059672)
chr6 (17-151)||(26079515-26079642)
chr6 (17-198)||(25486852-25487036)
chr6 (17-198)||(26146450-26146634)
chr6 (17-78)||(25986741-25986802)
chr6 (17-110)||(27661943-27662036)
chr6 (17-64)||(25514427-25514474)
chr6 (27-101)||(27423901-27423975)
chr6 (152-228)||(27715139-27715218)
chr6 (152-277)||(26852028-26852165)
chr6 (163-277)||(26638871-26638985)
chr6 (163-277)||(26744837-26744951)
chr6 (17-98)||(27079030-27079111)
chr6 (152-228)||(27682437-27682516)
chr6 (158-228)||(28782487-28782560)
chr6 (158-228)||(28789861-28789934)
chr6 (17-67)||(27715042-27715092)
chr6 (164-228)||(28795879-28795946)
chr6 (17-92)||(25077802-25077877)
chr6 (158-229)||(26626659-26626733)
chr6 (158-229)||(26732636-26732710)
chr6 (146-198)||(27078815-27078867)
chr6 (233-263)||(26827377-26827407)
chr6 (59-101)||(27703284-27703326)
chr6 (157-229)||(26953130-26953205)
chr6 (150-198)||(25548451-25548499)
chr6 (241-277)||(26827324-26827360)
[»] chr4 (6 HSPs)
chr4 (158-277)||(18720714-18720833)
chr4 (158-269)||(18652126-18652237)
chr4 (158-277)||(18676184-18676303)
chr4 (158-277)||(18686224-18686343)
chr4 (158-277)||(18728150-18728269)
chr4 (163-277)||(18696035-18696149)
[»] scaffold0003 (1 HSPs)
scaffold0003 (27-101)||(63388-63462)
[»] scaffold0349 (2 HSPs)
scaffold0349 (152-228)||(16726-16805)
scaffold0349 (17-67)||(16852-16902)
[»] chr8 (2 HSPs)
chr8 (40-98)||(29270329-29270387)
chr8 (152-228)||(29270443-29270522)
[»] chr1 (2 HSPs)
chr1 (207-257)||(26139508-26139555)
chr1 (209-279)||(28124220-28124284)
[»] scaffold0419 (1 HSPs)
scaffold0419 (158-228)||(11005-11078)
[»] scaffold0277 (2 HSPs)
scaffold0277 (158-228)||(10265-10338)
scaffold0277 (164-228)||(1311-1378)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 26059672 - 26059545
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  26059672 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccac----atctttctttcat 26059577  T
Q  117 cttgtactcttctgcttaatatttcaatctcatcc 151  Q
    ||||| |    ||||||||||||||||||||||||    
T  26059576 cttgtgc---actgcttaatatttcaatctcatcc 26059545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 26079642 - 26079515
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  26079642 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccac----atctttctttcat 26079547  T
Q  117 cttgtactcttctgcttaatatttcaatctcatcc 151  Q
    ||||| |    ||||||||||||||||||||||||    
T  26079546 cttgtgc---actgcttaatatttcaatctcatcc 26079515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 25487036 - 25486852
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||    |||||||||||||    
T  25487036 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctagactaaggaatgtacccaac----atctttctttcat 25486941  T
Q  117 cttgtactcttctgcttaatatttcaatctca----------tcctcctcctctgcctctgaaactcccacttccataaatctttgcttttt 198  Q
    ||||  |    |||||||||||||||||||||          ||||||||| ||  ||||||||||||||||||||  ||||||||||||||    
T  25486940 cttgcgc---actgcttaatatttcaatctcatccctcctcctcctcctcccctttctctgaaactcccacttccaccaatctttgcttttt 25486852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 26146634 - 26146450
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||    |||||||||||||    
T  26146634 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctagactaaggaatgtacccaac----atctttctttcat 26146539  T
Q  117 cttgtactcttctgcttaatatttcaatctca----------tcctcctcctctgcctctgaaactcccacttccataaatctttgcttttt 198  Q
    ||||  |    |||||||||||||||||||||          ||||||||| ||  ||||||||||||||||||||  ||||||||||||||    
T  26146538 cttgcgc---actgcttaatatttcaatctcatccctcctcctcctcctcccctttctctgaaactcccacttccaccaatctttgcttttt 26146450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 25986802 - 25986741
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacct 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25986802 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacct 25986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 27661943 - 27662036
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttc 110  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||  | ||||  | | ||||||||||||||||||| ||||||    
T  27661943 acaaacctgcaaagttgagattgagaggataacaacaagacggttaactttatggcgcacctggatcaaggaatgtaccccacatatttctttc 27662036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 25514474 - 25514427
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaac 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25514474 acaaacctgcaatgttgagattgagagaataacaagaagacggttaac 25514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 27423901 - 27423975
Alignment:
Q  27 aatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacat 101  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  27423901 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtacccaacat 27423975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 27715139 - 27715218
Alignment:
Q  152 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| |   | |||| |||||||||||||||||||||    
T  27715139 tcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagaggaggctcaaattgtgataatgaagtatt 27715218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 277
Target Start/End: Complemental strand, 26852165 - 26852028
Alignment:
Q  152 tcctcctctgcctctgaaactcccacttccataaatctttgctttttcaggggctg---aaattgtgataatgaagtattg---------agaagatatt 239  Q
    |||||||||| |||||||||||  |||||||| |||||||||||||| || ||  |   ||||||||||||||||||||||         | ||||||||    
T  26852165 tcctcctctgtctctgaaactctaacttccatcaatctttgcttttttagaggaggcacaaattgtgataatgaagtattgctataattgaaaagatatt 26852066  T
Q  240 catctaattttctctttctactattaggatcggtgaat 277  Q
    |||||| ||||||||||||||||  ||||| |||||||    
T  26852065 catctagttttctctttctactagaaggattggtgaat 26852028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 26638985 - 26638871
Alignment:
Q  163 ctctgaaactcccacttccataaatctttgctttttcagggg---ctgaaattgtgataatgaagtattgagaagatattcatctaattttctctttcta 259  Q
    |||| ||||||||||| | |  ||||||||||||||||  ||   || ||||||||||||||||| ||| |||   ||||||||||||||||||||||||    
T  26638985 ctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaagcattcaga---tattcatctaattttctctttcta 26638889  T
Q  260 ctattaggatcggtgaat 277  Q
     ||| ||||| |||||||    
T  26638888 ttataaggattggtgaat 26638871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 26744951 - 26744837
Alignment:
Q  163 ctctgaaactcccacttccataaatctttgctttttcagggg---ctgaaattgtgataatgaagtattgagaagatattcatctaattttctctttcta 259  Q
    |||| ||||||||||| | |  ||||||||||||||||  ||   || ||||||||||||||||| ||| |||   ||||||||||||||||||||||||    
T  26744951 ctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaagcattcaga---tattcatctaattttctctttcta 26744855  T
Q  260 ctattaggatcggtgaat 277  Q
     ||| ||||| |||||||    
T  26744854 ttataaggattggtgaat 26744837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 27079111 - 27079030
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtacccca 98  Q
    |||||||| |||||||||||||||||||||||||| |||| || |||| | || ||| ||||| ||  ||||||||||||||    
T  27079111 acaaaccttcaatgttgagattgagagaataacaacaagatggctaacctcataatgcacctagacaaaggaatgtacccca 27079030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 27682516 - 27682437
Alignment:
Q  152 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||||||||| |||||||||||| |||||||  |||||||||||||| |   | |||| |||||||||||||||||||||    
T  27682516 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggctcaaattgtgataatgaagtatt 27682437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 28782560 - 28782487
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  28782560 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28782487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 28789934 - 28789861
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  28789934 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 27715042 - 27715092
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaacttt 67  Q
    ||||||||| | | |||||||||||||||||||||||||||| ||||||||    
T  27715042 acaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 27715092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 28795946 - 28795879
Alignment:
Q  164 tctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    ||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  28795946 tctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 25077877 - 25077802
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacc-taaaccgaggaatgt 92  Q
    ||||||||||||||||| |||| ||| || ||||| |||||||||||||||| |||| ||| |||||| ||||||||    
T  25077877 acaaacctgcaatgttgtgattaaga-aacaacaacaagacggttaactttacgatgcaccttaaaccaaggaatgt 25077802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 26626733 - 26626659
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtattg 229  Q
    |||| |||||||||||||| |||||  ||||||||||||||||   | |||| ||| ||||||||||||||||||    
T  26626733 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtattg 26626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 26732710 - 26732636
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtattg 229  Q
    |||| |||||||||||||| |||||  ||||||||||||||||   | |||| ||| ||||||||||||||||||    
T  26732710 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtattg 26732636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 27078867 - 27078815
Alignment:
Q  146 tcatcctcctcctctgcctctgaaactcccacttccataaatctttgcttttt 198  Q
    |||||||||||||||| ||| ||||||||||||||||  |||| |||||||||    
T  27078867 tcatcctcctcctctgtctcggaaactcccacttccaccaatccttgcttttt 27078815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 26827407 - 26827377
Alignment:
Q  233 agatattcatctaattttctctttctactat 263  Q
    |||||||||||||||||||||||||||||||    
T  26827407 agatattcatctaattttctctttctactat 26827377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 27703284 - 27703326
Alignment:
Q  59 gttaactttatgatggacctaaaccgaggaatgtaccccacat 101  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  27703284 gttaactttatgatggagctagaccaaggaatgtaccccacat 27703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 26953205 - 26953130
Alignment:
Q  157 ctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtattg 229  Q
    ||||| |||||||||||||||||| | |||||| ||||||||||   | |||| |||||| |||||| ||||||||    
T  26953205 ctctgtctctgaaactcccacttcaacaaatctatgctttttcagaggaggctcaaattgcgataataaagtattg 26953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 25548499 - 25548451
Alignment:
Q  150 cctcctcctctgcctctgaaactcccacttccataaatctttgcttttt 198  Q
    |||||||| ||  ||||||||||||||||||||  ||||||||||||||    
T  25548499 cctcctcccctttctctgaaactcccacttccaccaatctttgcttttt 25548451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 26827360 - 26827324
Alignment:
Q  241 atctaattttctctttctactattaggatcggtgaat 277  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  26827360 atctaattttctctttctactataaggattggtgaat 26827324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 18720714 - 18720833
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttcaggg---gctgaaattgtgataatgaagtattgagaagatattcatctaattttctct 254  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| |   | ||||||||||||||||||| |||||||   |||||||||||||||||||    
T  18720714 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaagcattgaga---tattcatctaattttctct 18720810  T
Q  255 ttctactattaggatcggtgaat 277  Q
    ||||||||| ||||| |||||||    
T  18720811 ttctactataaggattggtgaat 18720833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 18652126 - 18652237
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttcaggg---gctgaaattgtgataatgaagtattgagaagatattcatctaattttctct 254  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| |   | ||||||||||||||||||| |||||||   |||||||||||||||||||    
T  18652126 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaagcattgaga---tattcatctaattttctct 18652222  T
Q  255 ttctactattaggat 269  Q
    ||||||||| |||||    
T  18652223 ttctactataaggat 18652237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 18676184 - 18676303
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttcaggg---gctgaaattgtgataatgaagtattgagaagatattcatctaattttctct 254  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| |   | ||||||||||||||||||| |||||||   |||||||||| ||||||||    
T  18676184 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaagcattgaga---tattcatctatttttctct 18676280  T
Q  255 ttctactattaggatcggtgaat 277  Q
    ||||||||| ||||| |||||||    
T  18676281 ttctactataaggattggtgaat 18676303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 18686224 - 18686343
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttcaggg---gctgaaattgtgataatgaagtattgagaagatattcatctaattttctct 254  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| |   | ||||||||||||||||||| |||||||   |||||||||||||||||||    
T  18686224 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaagcattgaga---tattcatctaattttctct 18686320  T
Q  255 ttctactattaggatcggtgaat 277  Q
    ||||||||| || || |||||||    
T  18686321 ttctactataagaattggtgaat 18686343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 18728150 - 18728269
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttcaggg---gctgaaattgtgataatgaagtattgagaagatattcatctaattttctct 254  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| |   | ||||||||||||||||||| |||||||   |||||||||||||||||||    
T  18728150 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaagcattgaga---tattcatctaattttctct 18728246  T
Q  255 ttctactattaggatcggtgaat 277  Q
     |||||||| ||||| |||||||    
T  18728247 atctactataaggattggtgaat 18728269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 18696035 - 18696149
Alignment:
Q  163 ctctgaaactcccacttccataaatctttgctttttcaggg---gctgaaattgtgataatgaagtattgagaagatattcatctaattttctctttcta 259  Q
    |||||||||||| |||||||||||||| ||||||||||| |   | ||||||||||||||||||| |||||||   ||||||||||||| ||||||||||    
T  18696035 ctctgaaactccgacttccataaatctatgctttttcagagtaggatgaaattgtgataatgaagcattgaga---tattcatctaattctctctttcta 18696131  T
Q  260 ctattaggatcggtgaat 277  Q
    |||| ||||| |||||||    
T  18696132 ctataaggattggtgaat 18696149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 63462 - 63388
Alignment:
Q  27 aatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacat 101  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  63462 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtacccaacat 63388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 16805 - 16726
Alignment:
Q  152 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| |   | |||| |||||||||||||||||||||    
T  16805 tcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagaggaggctcaaattgtgataatgaagtatt 16726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 16902 - 16852
Alignment:
Q  17 acaaacctgcaatgttgagattgagagaataacaagaagacggttaacttt 67  Q
    ||||||||| | | |||||||||||||||||||||||||||| ||||||||    
T  16902 acaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 16852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 29270329 - 29270387
Alignment:
Q  40 agagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtacccca 98  Q
    |||||||||||||||||||||||||||||| ||||||||| ||  ||| ||||||||||    
T  29270329 agagaataacaagaagacggttaactttataatggacctagactaaggtatgtacccca 29270387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 29270443 - 29270522
Alignment:
Q  152 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| |   | |||  |||||||||||||||||||||    
T  29270443 tcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 29270522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 26139555 - 26139508
Alignment:
Q  207 gaaattgtgataatgaagtattgagaagatattcatctaattttctctttc 257  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||    
T  26139555 gaaattgtgataatgaagtattg---agatattcatctaattttctctttc 26139508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 28124220 - 28124284
Alignment:
Q  209 aattgtgataatgaagtattgagaagatattcatctaattttctctttctactattaggatcggtgaatct 279  Q
    |||||||||||||||||||||   ||||||| ||||||||||||||||   |||| |||||||||||||||    
T  28124220 aattgtgataatgaagtattg---agatattaatctaattttctcttt---ctataaggatcggtgaatct 28124284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 11078 - 11005
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  11078 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 11005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 10265 - 10338
Alignment:
Q  158 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  10265 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 10338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 1311 - 1378
Alignment:
Q  164 tctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 228  Q
    ||||||||| |||||||||  ||||||||||||||||   | |||| ||||||| |||||||||||||    
T  1311 tctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtaataatgaagtatt 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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