View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_33 (Length: 284)
Name: NF13869_low_33
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 35280864 - 35280603
Alignment:
| Q |
1 |
tccatatgaatcaaacaaacaaaagggttctatgaataatacaattttttaagatacaaaggtattcaaaacatgattannnnnnnnnnncaatcaacac |
100 |
Q |
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| T |
35280864 |
tccatatgaatcaaacaaacaaaagggttctaagaataatacaattttttaagatacaaaggtattcaaaacatgaatttttttttttttcaatcaa--- |
35280768 |
T |
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| Q |
101 |
atcaatacattattaagaggcagatggagcaaattaaagatacaaagatataaannnnnnn-gaattaactagaaactatagtgatcgacaatcatatat |
199 |
Q |
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| T |
35280767 |
-----tacattattaagaggcagagggagcaaattaaagatacaaagatatcaattttttttgaactaactagaaactatagtgatcgacaatcatatat |
35280673 |
T |
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| Q |
200 |
taagatagtaatatataataaatttttagaaacttgttataaaatattactaagatataaatgtagttat |
269 |
Q |
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| T |
35280672 |
taagatagtaatatataataaatttttagaaacttgttataaaatattactaagatataaatgtagttat |
35280603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 35280931 - 35280868
Alignment:
| Q |
2 |
ccatatgaatcaaacaaacaaaagggttctatgaataatacaattttttaagatacaaaggtatt |
66 |
Q |
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| T |
35280931 |
ccatataaatcaaacaaacaaaacggttcta-gaataatacaattttttcagatacaaaggtatt |
35280868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 2649343 - 2649289
Alignment:
| Q |
195 |
tatattaagatagtaa-tatataataaatttttagaaacttgttataaaatatta |
248 |
Q |
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| T |
2649343 |
tatattaagatagaaaatatataataaagttttagaaacttgttacaaaatatta |
2649289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 24789104 - 24789043
Alignment:
| Q |
210 |
atatataataaatttttagaaacttgttataaaatattactaagatataaatgtagttattg |
271 |
Q |
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|||||||||||| ||| | ||| | |||||||||||||| ||| ||||||||| |||||||| |
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| T |
24789104 |
atatataataaaatttcaaaaagtagttataaaatattattaaaatataaatgaagttattg |
24789043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 20074848 - 20074795
Alignment:
| Q |
209 |
aatatataataaatttttagaaacttgttataaaatattactaagatataaatg |
262 |
Q |
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| T |
20074848 |
aatatataataaagttttagaaacttgttatgaaatattaataataaataaatg |
20074795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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