View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13869_low_37 (Length: 268)

Name: NF13869_low_37
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13869_low_37
NF13869_low_37
[»] chr8 (6 HSPs)
chr8 (1-257)||(8578505-8578761)
chr8 (25-127)||(8603608-8603710)
chr8 (25-63)||(35869744-35869782)
chr8 (15-63)||(12972753-12972801)
chr8 (68-114)||(6509328-6509374)
chr8 (15-60)||(34563147-34563192)
[»] chr7 (7 HSPs)
chr7 (54-128)||(514752-514826)
chr7 (71-139)||(39505958-39506026)
chr7 (27-60)||(26030895-26030928)
chr7 (15-63)||(7100742-7100790)
chr7 (23-63)||(18749935-18749975)
chr7 (17-49)||(30133950-30133982)
chr7 (21-53)||(31751870-31751902)
[»] chr4 (6 HSPs)
chr4 (25-63)||(24443945-24443983)
chr4 (14-61)||(4471067-4471114)
chr4 (69-123)||(3175951-3176005)
chr4 (70-115)||(29263371-29263416)
chr4 (15-63)||(485978-486026)
chr4 (15-63)||(46053597-46053645)
[»] scaffold0085 (1 HSPs)
scaffold0085 (15-55)||(26174-26214)
[»] chr3 (6 HSPs)
chr3 (76-127)||(44284092-44284143)
chr3 (15-63)||(29094278-29094326)
chr3 (25-63)||(28881833-28881871)
chr3 (78-127)||(53848075-53848124)
chr3 (70-114)||(24158528-24158572)
chr3 (74-142)||(30923895-30923963)
[»] chr6 (5 HSPs)
chr6 (68-113)||(33067157-33067202)
chr6 (15-54)||(4247218-4247257)
chr6 (15-61)||(21919971-21920017)
chr6 (26-63)||(31668810-31668847)
chr6 (15-63)||(31337920-31337968)
[»] chr5 (13 HSPs)
chr5 (16-52)||(8472007-8472043)
chr5 (15-63)||(26516195-26516243)
chr5 (17-61)||(31687924-31687968)
chr5 (71-115)||(40205098-40205142)
chr5 (13-63)||(6738532-6738582)
chr5 (69-115)||(28409389-28409435)
chr5 (15-60)||(912995-913040)
chr5 (69-142)||(4855698-4855771)
chr5 (18-63)||(20982260-20982305)
chr5 (14-63)||(38819700-38819749)
chr5 (14-54)||(6725133-6725173)
chr5 (15-63)||(14716595-14716643)
chr5 (15-63)||(23999053-23999101)
[»] chr2 (11 HSPs)
chr2 (76-115)||(43591534-43591573)
chr2 (68-114)||(9878707-9878753)
chr2 (13-51)||(29419801-29419839)
chr2 (17-62)||(19333411-19333456)
chr2 (13-54)||(42817510-42817551)
chr2 (15-63)||(2400053-2400101)
chr2 (29-73)||(9404511-9404555)
chr2 (27-63)||(34339032-34339068)
chr2 (35-71)||(37053511-37053547)
chr2 (68-140)||(39983341-39983413)
chr2 (26-54)||(43965264-43965292)
[»] scaffold0020 (1 HSPs)
scaffold0020 (69-142)||(159970-160043)
[»] chr1 (1 HSPs)
chr1 (78-115)||(4699639-4699676)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-63)||(27473-27521)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 8578505 - 8578761
Alignment:
Q  1 ctgtttcaaaatgtttaattaaatgcttatagcataagcacttatcatataagttcttatgtacagactataaggtgttttcataagctatcccggagag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  8578505 ctgtttcaaaatgttcaattaaatgcttatagcataagcacttatcatataagtgcttatgtacagactataagctgttttcataagctatcccggagag 8578604  T
Q  101 cttgtagaaataagccggaaatagcttcaagacatgtcataatgnnnnnnnatatagctaagcaatctgcagtactaggcagaattggttttgtagtttg 200  Q
    ||||||||||||||||| |||||||||| |||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8578605 cttgtagaaataagccgaaaatagcttctagacatgtcataatgtttttttatatagctaagcaatctgcagtactgggcagaattggttttgtagtttg 8578704  T
Q  201 gatcaatgaatttgaatgctaacaattttatctccctatgttgtgtttataggttat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578705 gatcaatgaatttgaatgctaacaattttatctccctatgttgtgtttataggttat 8578761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 8603608 - 8603710
Alignment:
Q  25 gcttatagcataagcacttatcatataagttcttatgtacagactataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatag 124  Q
    |||||||||||||||||||| ||||||||| |||||||| | |||||||| | ||| |||||| ||||| ||||||||||||||||| ||| | ||||||    
T  8603608 gcttatagcataagcacttaccatataagtgcttatgtataaactataagctatttgcataagttatcctggagagcttgtagaaatgagcggaaaatag 8603707  T
Q  125 ctt 127  Q
    |||    
T  8603708 ctt 8603710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 35869744 - 35869782
Alignment:
Q  25 gcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35869744 gcttatagcataagcacttatcatataagttcttatgta 35869782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 12972753 - 12972801
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  12972753 ttaattaagcgcttatagcataagcatttatcatataagtgcttatgta 12972801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 6509374 - 6509328
Alignment:
Q  68 ctataaggtgttttcataagctatcccggagagcttgtagaaataag 114  Q
    ||||||| |||||||||||||||||| ||||||||| | ||||||||    
T  6509374 ctataagctgttttcataagctatcctggagagcttattgaaataag 6509328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 34563147 - 34563192
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttat 60  Q
    ||||||||| ||||||||||||| || ||||||||||||| |||||    
T  34563147 ttaattaaacgcttatagcataaacatttatcatataagtgcttat 34563192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 514752 - 514826
Alignment:
Q  54 ttcttatgtacagactataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttc 128  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||||||||||  |||||||| | ||||| ||||    
T  514752 ttcttatgtacaacctataagctgttttcataagctatcctggagagcttgtcaaaataagctgaaaataacttc 514826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 39505958 - 39506026
Alignment:
Q  71 taaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtca 139  Q
    |||| |||||||||||||||| | |||||| || | ||||||||| | |||||||||| ||||||||||    
T  39505958 taagttgttttcataagctattctggagagtttatggaaataagctgaaaatagcttccagacatgtca 39506026  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 26030895 - 26030928
Alignment:
Q  27 ttatagcataagcacttatcatataagttcttat 60  Q
    |||||||||||||||||||||||||||| |||||    
T  26030895 ttatagcataagcacttatcatataagtacttat 26030928  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 7100790 - 7100742
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||||||||||||||||| ||||||  ||||||||||||| ||| ||||    
T  7100790 ttaattaaatgcttatagtataagcgtttatcatataagtacttgtgta 7100742  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 18749975 - 18749935
Alignment:
Q  23 atgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||||||||||| |||||||||||||| ||| ||||    
T  18749975 atgcttatagcataagctcttatcatataagtacttgtgta 18749935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 30133950 - 30133982
Alignment:
Q  17 aattaaatgcttatagcataagcacttatcata 49  Q
    ||||||||||||||||||||||| |||||||||    
T  30133950 aattaaatgcttatagcataagcgcttatcata 30133982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 31751902 - 31751870
Alignment:
Q  21 aaatgcttatagcataagcacttatcatataag 53  Q
    ||||||||||||||||| |||||||||||||||    
T  31751902 aaatgcttatagcataatcacttatcatataag 31751870  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 24443945 - 24443983
Alignment:
Q  25 gcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24443945 gcttatagcataagcacttatcatataagttcttatgta 24443983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 4471067 - 4471114
Alignment:
Q  14 tttaattaaatgcttatagcataagcacttatcatataagttcttatg 61  Q
    ||||||||| ||||||||||||||||| |||| |||||||| ||||||    
T  4471067 tttaattaactgcttatagcataagcaattattatataagtgcttatg 4471114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 3175951 - 3176005
Alignment:
Q  69 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaata 123  Q
    |||||| |||||||||||||||||| | || ||||||||||||||| || |||||    
T  3175951 tataagctgttttcataagctatcctgaagggcttgtagaaataagtcgaaaata 3176005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 29263371 - 29263416
Alignment:
Q  70 ataaggtgttttcataagctatcccggagagcttgtagaaataagc 115  Q
    ||||| |||||||||||||||||| | ||||||||| |||||||||    
T  29263371 ataagttgttttcataagctatcctgcagagcttgtggaaataagc 29263416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 485978 - 486026
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||  ||||||||||||||| ||||||||| |||| ||||||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgta 486026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 46053597 - 46053645
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||  ||||||||||| || ||||||||||||||| ||||||||    
T  46053597 ttaattaagcgcttatagcatgagtacttatcatataagtacttatgta 46053645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 26214 - 26174
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagtt 55  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  26214 ttaattaagtgcttatagcataagcacttatcatataagtt 26174  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 44284143 - 44284092
Alignment:
Q  76 tgttttcataagctatcccggagagcttgtagaaataagccggaaatagctt 127  Q
    |||||||||||||||||| ||||||||| ||||||||||| | |||||||||    
T  44284143 tgttttcataagctatcctggagagcttatagaaataagctgaaaatagctt 44284092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 29094278 - 29094326
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||| ||||||||||||| ||||||||||||||||  |||||||    
T  29094278 ttaattaaacgcttatagcataaacacttatcatataagtgtttatgta 29094326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 28881871 - 28881833
Alignment:
Q  25 gcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  28881871 gcttatagcataagaacttatcatataagctcttatgta 28881833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 53848124 - 53848075
Alignment:
Q  78 ttttcataagctatcccggagagcttgtagaaataagccggaaatagctt 127  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||| |||||    
T  53848124 ttttcataaactatcccagagagcttatagaaataagccgaaaacagctt 53848075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 24158572 - 24158528
Alignment:
Q  70 ataaggtgttttcataagctatcccggagagcttgtagaaataag 114  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||    
T  24158572 ataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 30923963 - 30923895
Alignment:
Q  74 ggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 142  Q
    ||||||||||||| ||||||  ||||| || ||||||||||| | ||| |||||  |||||||||||||    
T  30923963 ggtgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataa 30923895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 33067157 - 33067202
Alignment:
Q  68 ctataaggtgttttcataagctatcccggagagcttgtagaaataa 113  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||    
T  33067157 ctataagttgttttcataagctatcttggagagcttgtagaaataa 33067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 4247257 - 4247218
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagt 54  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  4247257 ttaattaagtgcttatagcataagtacttatcatataagt 4247218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 21919971 - 21920017
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatg 61  Q
    ||||||||  |||||||||||||| ||||||||||||||| ||||||    
T  21919971 ttaattaagcgcttatagcataagtacttatcatataagtgcttatg 21920017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 31668847 - 31668810
Alignment:
Q  26 cttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  31668847 cttatagcataagcaattatcatataagtgcttatgta 31668810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 31337920 - 31337968
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||||| ||||||||||||| |||||  ||||||| ||||||||    
T  31337920 ttaattaaatgtttatagcataagcgcttattgtataagtacttatgta 31337968  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 8472007 - 8472043
Alignment:
Q  16 taattaaatgcttatagcataagcacttatcatataa 52  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8472007 taattaaatgcttttagcataagcacttatcatataa 8472043  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 26516195 - 26516243
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||    
T  26516195 ttaattaagcgcttatagcataagcgcttatcatataagtgcttatgta 26516243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 31687924 - 31687968
Alignment:
Q  17 aattaaatgcttatagcataagcacttatcatataagttcttatg 61  Q
    |||||||||||||||||||| || |||||||||||||| ||||||    
T  31687924 aattaaatgcttatagcataggcgcttatcatataagtgcttatg 31687968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 40205142 - 40205098
Alignment:
Q  71 taaggtgttttcataagctatcccggagagcttgtagaaataagc 115  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagc 40205098  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 6738582 - 6738532
Alignment:
Q  13 gtttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||||  | ||||||||||| |||||||||||||||| ||||||||    
T  6738582 gtttaattaagagtttatagcataaacacttatcatataagtacttatgta 6738532  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 28409435 - 28409389
Alignment:
Q  69 tataaggtgttttcataagctatcccggagagcttgtagaaataagc 115  Q
    |||||| | |||| ||||||||||||||||| |||||||||||||||    
T  28409435 tataagctatttttataagctatcccggagaacttgtagaaataagc 28409389  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 913040 - 912995
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttat 60  Q
    |||||||||||||||||  |||| |||||||||||||||| |||||    
T  913040 ttaattaaatgcttatactataaacacttatcatataagtacttat 912995  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 4855698 - 4855771
Alignment:
Q  69 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 142  Q
    |||||| ||||||||||| |||||||  |||||||  |||||||||||| ||| ||||||   |||||||||||    
T  4855698 tataagttgttttcataaactatcccaaagagcttacagaaataagccgaaaacagcttctgaacatgtcataa 4855771  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 20982305 - 20982260
Alignment:
Q  18 attaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||| |||||||||||||||  |||||||||||||| ||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgta 20982260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 38819749 - 38819700
Alignment:
Q  14 tttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||||||||||  |||| ||||||||||||||||||||||  ||||||||    
T  38819749 tttaattaaatttttatggcataagcacttatcatataagggcttatgta 38819700  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 6725133 - 6725173
Alignment:
Q  14 tttaattaaatgcttatagcataagcacttatcatataagt 54  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  6725133 tttaattaagtgcttatagcataagtgcttatcatataagt 6725173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 14716643 - 14716595
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||||||| ||||||||||||||| | || |||||||||| ||||||||    
T  14716643 ttaattaagtgcttatagcataaggatttgtcatataagtgcttatgta 14716595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 23999053 - 23999101
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||||||||||||||||| |||||  |||||||||||||| ||| ||||    
T  23999053 ttaattaaatgcttatagaataagggcttatcatataagtgcttgtgta 23999101  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 43591573 - 43591534
Alignment:
Q  76 tgttttcataagctatcccggagagcttgtagaaataagc 115  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  43591573 tgttttcataagctatcccgaagagcttgtggaaataagc 43591534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 9878753 - 9878707
Alignment:
Q  68 ctataaggtgttttcataagctatcccggagagcttgtagaaataag 114  Q
    ||||||| |||||||||  |||||||||||||||||| |||||||||    
T  9878753 ctataagttgttttcattcgctatcccggagagcttgaagaaataag 9878707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 29419801 - 29419839
Alignment:
Q  13 gtttaattaaatgcttatagcataagcacttatcatata 51  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  29419801 gtttaattaaatgcttatagcataaaaacttatcatata 29419839  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 19333456 - 19333411
Alignment:
Q  17 aattaaatgcttatagcataagcacttatcatataagttcttatgt 62  Q
    ||||||| |||||||||||||||||||| || |||||| |||||||    
T  19333456 aattaaacgcttatagcataagcacttaccacataagtgcttatgt 19333411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 42817551 - 42817510
Alignment:
Q  13 gtttaattaaatgcttatagcataagcacttatcatataagt 54  Q
    |||||||||| ||||||||||||||||  |||||||||||||    
T  42817551 gtttaattaagtgcttatagcataagcgtttatcatataagt 42817510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 2400053 - 2400101
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||||| |||| |||||| || ||||||||||||| ||||||||    
T  2400053 ttaattaaatgtttatggcataaacaattatcatataagtgcttatgta 2400101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 9404511 - 9404555
Alignment:
Q  29 atagcataagcacttatcatataagttcttatgtacagactataa 73  Q
    ||||||||| |||||||||||||||| |||||||| | |||||||    
T  9404511 atagcataaacacttatcatataagtgcttatgtataaactataa 9404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 34339032 - 34339068
Alignment:
Q  27 ttatagcataagcacttatcatataagttcttatgta 63  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  34339032 ttatagcataaacacttatcatataagtgcttatgta 34339068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 37053511 - 37053547
Alignment:
Q  35 taagcacttatcatataagttcttatgtacagactat 71  Q
    |||||||||||||||||||| |||||||| |||||||    
T  37053511 taagcacttatcatataagtgcttatgtatagactat 37053547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 39983341 - 39983413
Alignment:
Q  68 ctataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcat 140  Q
    ||||||| |||||||||||||||||| ||||||||  |  |||||| | | |||||||||  |||||||||||    
T  39983341 ctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttatagacatgtcat 39983413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 43965292 - 43965264
Alignment:
Q  26 cttatagcataagcacttatcatataagt 54  Q
    |||||||||||||||||||||||||||||    
T  43965292 cttatagcataagcacttatcatataagt 43965264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 160043 - 159970
Alignment:
Q  69 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 142  Q
    |||||| ||||||||||||||||||   ||||||||| ||||||||| | |||  ||||  |||||||||||||    
T  160043 tataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcataa 159970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 4699676 - 4699639
Alignment:
Q  78 ttttcataagctatcccggagagcttgtagaaataagc 115  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4699676 ttttcataaactatcccggagagcttatagaaataagc 4699639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 27473 - 27521
Alignment:
Q  15 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 63  Q
    |||| |||| ||||||||||||||| |||||||| ||||| ||||||||    
T  27473 ttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgta 27521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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