View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_42 (Length: 242)
Name: NF13869_low_42
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 13767170 - 13766947
Alignment:
| Q |
1 |
tagtaacattgaagtttgcagctaaagaggccaaaagttggtggttatatgaaacatgatttgaacagagtttgagaacataatccatatatttcatact |
100 |
Q |
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| T |
13767170 |
tagtaacattgaagtttgcagctaaagaggccaaaagttggtggttat--gaaacatgatttgaactgagtttgagaacatattccatatatttcatact |
13767073 |
T |
|
| Q |
101 |
atctaggtaaactatataatatcaataacatatgtcaaagatattcacataaataactttttcaagtcattataatgtacctctaaagtatatttgttac |
200 |
Q |
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| T |
13767072 |
atctaggtaaactatataatatcaataacatatgtcaaagatattcacataaataactttttcaagtcattataatgtacctctaaagtatatttgttac |
13766973 |
T |
|
| Q |
201 |
ttggttaattgattggcttaggcata |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13766972 |
ttggttaattgattggcttaggcata |
13766947 |
T |
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