View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_44 (Length: 235)
Name: NF13869_low_44
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34412831 - 34412602
Alignment:
| Q |
1 |
ataaatactgtgaaagaattaccgcaaaagcatcccgaatttgaaaccaaccaggnnnnnnnn-tgcatatggccggaattcacgtgaagtcaaagaaaa |
99 |
Q |
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| T |
34412831 |
ataaatactgtgaaagaattaccgcaaaagcatcccgaatttgaaaccaaccaggaaaaaaaaatgcatatggccggaattcatgtgaagtcaaagaaaa |
34412732 |
T |
|
| Q |
100 |
agtggttggatggaataaaggttgcaatggattcgcgagaatggcatt-------catagca--ttttccaaaaaatatttaagcttgatttgaaaattg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
34412731 |
agtggttggatggaataaaggttgcaatggattcgcgagaatggcattcactttacatagcatttttttcaaaaaatatttaagcttgatttgaaaattg |
34412632 |
T |
|
| Q |
191 |
agaatttaggacaaaatgtgatgttaaact |
220 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34412631 |
agaatttaggacaaaatgtgatgttaaact |
34412602 |
T |
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