View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_45 (Length: 234)
Name: NF13869_low_45
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8578479 - 8578385
Alignment:
| Q |
1 |
aacacactatcatggaagcaaaaacaataatgaagaagaacgaggcagcgataccttagattttctgaaaagaatgttcagaaattcaaaaggat |
95 |
Q |
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| T |
8578479 |
aacacactatcatggaagcaaaaacaataatgaagaagaacgaggcagcgataccttagattttctgaaaagaatgttcagaaattcaaaaggat |
8578385 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 8578332 - 8578264
Alignment:
| Q |
152 |
ttgttgatttcctgcaaatttttctgtaactttggaatttgtaggaaaacaaagcgatatcgtcaatagt |
221 |
Q |
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| T |
8578332 |
ttgttgatttcctgcaaatttttctgtaactt-ggaatttgtaggaaaacaaagcgatatcgtcaatagt |
8578264 |
T |
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