View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_46 (Length: 227)
Name: NF13869_low_46
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 35364814 - 35365006
Alignment:
| Q |
28 |
aattagttacaattatataaaagaaataaatcagaaagtgatgaaatagtttttctaaataattttcatttatgcnnnnnnnaagcttaagtagtacctc |
127 |
Q |
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| T |
35364814 |
aattagttacaattatataaaagaaataaatcagaaagtgatgaaatagtttttctaaataattttcatttatgctttttttaagcttaagtagtacctc |
35364913 |
T |
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| Q |
128 |
agtaaattgaaatttaatttcttactgcaaaattaatagaaaagattgatacattgaggtttagtgcacataccaaaagcttgagggttgttaa |
221 |
Q |
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| T |
35364914 |
agtaaattgaaatttaatttcttactgcaaaattaatag-aaagattgatacatagaggtttagtgcacataccaaaagcttgagggttgttaa |
35365006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 35376509 - 35376551
Alignment:
| Q |
180 |
attgaggtttagtgcacataccaaaagcttgagggttgttaat |
222 |
Q |
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| T |
35376509 |
attgaagtttagtgcacataccaaaagcttgagggttggtaat |
35376551 |
T |
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