View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_7 (Length: 683)
Name: NF13869_low_7
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 117 - 667
Target Start/End: Original strand, 31824841 - 31825391
Alignment:
| Q |
117 |
accacattttcattcatgtttcccccatcatacttacctcttagcaaagaacatcacaacttagtatcattgctccagagctcccacccaagcttcataa |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31824841 |
accacattttcattcatgtttcccctatcatacttacctcttagcaaagaacatcacaacttagtatcattgctccagagctcccacccaagcttcataa |
31824940 |
T |
|
| Q |
217 |
gacaagcatcgtttataacctccaatcatctcaacccgaga-ccccaaatttctttgctatcatcacttgcatacaattcacagaatgaaatttttcttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31824941 |
gacaagcatcgtttataacctccaatcatctcaacccaagacccccaaatttctttgctatcatcacttgcatacaattcacagaatgaaatttttcttc |
31825040 |
T |
|
| Q |
316 |
catcttctaaatcacctcaaataaaagagagcattgaattctttgaatctcatccaaacaagttgcaattctcataaggtatacaacaaaatttaaacat |
415 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31825041 |
catcttctaaatcaccccaaataaa--agagcattgaattctttgaatctcatccaaacaagatgcaattctcataaggtatacaacaaaatttaaacat |
31825138 |
T |
|
| Q |
416 |
gtgtagaatctcaaagtgtaataacttacatatctctgaaaagtctaaaaacaaaattgagcaa-nnnnnnnataataatctcttccccttttaatctca |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
31825139 |
gtgtagaatctcaaagtgtaataacttacatatctctgaaaagtctaaaaacaaaattgaacaattttttttataataatctcttccccttttaatctca |
31825238 |
T |
|
| Q |
515 |
caaaattgatatgttcacgttgatgctgtgcgtataaacagaatttaaataaaaaatatgctgccatatgattttacaaaattgtaatagaatcaaaaag |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31825239 |
caaaattgatatgttcacgttgatgctgtgcgtataaacagaatttaaataaaaaatatgctgccatatgattttacaaaattgtaaaagaatcaaaaag |
31825338 |
T |
|
| Q |
615 |
aaaaacataaactagaatcataattcaccataaacagtcacttcattagattt |
667 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31825339 |
aaaaacataaactagaatcataattcaccataaacagtcacttcattagattt |
31825391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 32776588 - 32776639
Alignment:
| Q |
592 |
aaaattgtaatagaatcaaaaagaaaaacataaactagaatcataattcacca |
644 |
Q |
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|||||||||| |||| ||||| ||||||||||||||||||| ||| ||||||| |
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| T |
32776588 |
aaaattgtaaaagaaacaaaa-gaaaaacataaactagaataatagttcacca |
32776639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 62 - 366
Target Start/End: Original strand, 5245204 - 5245504
Alignment:
| Q |
62 |
aggccaaaatttaaccaaagatctccaaagacttgaattagtaggtttgtgcatcaccacattttcattcatgtttcccccatcatacttacctcttagc |
161 |
Q |
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||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||| |||||| ||| | ||||||||| ||||||||| |||||||| |
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| T |
5245204 |
aggccaaaacataaccaaggatctccaaagacttgaatcagtaggttt-agcatcagcacattcccatccttgtttcccctttcatacttatctcttagc |
5245302 |
T |
|
| Q |
162 |
aaagaacatcacaacttagtatcattgctccagagctcccacccaagcttcataagacaagcatcgtttataacctccaatcatctcaacccgagacccc |
261 |
Q |
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| || ||| || ||||||| |||||||||| || ||||||||||||||||| |||||||| || ||| |||||||||| ||||||||| ||||||| |
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| T |
5245303 |
acagcacaccataacttagcatcattgctcggga-ctcccacccaagcttcaaaagacaagagtcatttttaacctccaactttctcaacccaagacccc |
5245401 |
T |
|
| Q |
262 |
-aaatttctttgctatcatcacttgcatacaattcacagaatgaaatttttcttccatcttctaaatcacctcaaataaaagagagcattgaattctttg |
360 |
Q |
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|||||||| | | ||||||||||||| |||||||||| |||||| ||| |||||| |||| ||||||| ||||||| ||||| |||||||||||| |
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| T |
5245402 |
tgaatttcttaggtttcatcacttgcatccaattcacagcatgaaa-tttccttccagcttccgaatcacccaaaataaa--agagcgttgaattctttg |
5245498 |
T |
|
| Q |
361 |
aatctc |
366 |
Q |
| |
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|||||| |
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|
| T |
5245499 |
aatctc |
5245504 |
T |
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