View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_8 (Length: 602)
Name: NF13869_low_8
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 45699372 - 45698779
Alignment:
| Q |
1 |
aacaaaaacaaaaattctcttggtatattattaattttgagtaagagtttcacgttaaatgaaatagttgatgttgaacactttataagggagtctagtg |
100 |
Q |
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| T |
45699372 |
aacaaaaacaaaaattctcttggtatattattaattttgagtaagagtttcacgttaaatgaaatagttgatgttgaacactttataagggagtctagtg |
45699273 |
T |
|
| Q |
101 |
agagaatccattaacctaaatgtttttccatatcataatttgtgacatgcatgcaggtggatatattcatataaggtgtactcatgagttgttgaattag |
200 |
Q |
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| T |
45699272 |
agtgaatccataaacctaaatgtttttccatatcataatttgcgacatgcatgcaggtggatatattcatataaggtgtactcatgagttgttgaattag |
45699173 |
T |
|
| Q |
201 |
tcatttc-----ctgagcgaattttttatggacaccacaatttattagttttagtggagctatgttatttgaacaaccatttacgaaacaattgatacga |
295 |
Q |
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| T |
45699172 |
tcatttccacgtctgagcgaattttttatggacaccacaatttattagttttagtggaggtatgttatttgaacaactatttacaaaacaattgatacgg |
45699073 |
T |
|
| Q |
296 |
caacaaaaaatataaagagaaagtaaaaacacaatatgagtatgacaactttattgattcatcatagacaaagaatcttaagacgggtcatgaacatgaa |
395 |
Q |
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| T |
45699072 |
caacaaaaaatataaagagaaagtaaaaacacaatatgagtatgacaactttattgattcatcaaagacaaagaaccttaagacgggtcatgaacatgaa |
45698973 |
T |
|
| Q |
396 |
ataaatacattttaatcaataataactttgnnnnnnngtaatccaaacacccctcacaagctccaagttggagaatgtgtgaaaaacacatcgagcttgg |
495 |
Q |
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| T |
45698972 |
ataaatacattttaatcaataataactttgttttttt-taatccaaacacccctcacaagctccatgttggagaatgtgtgaaaaacacatcgagcttgg |
45698874 |
T |
|
| Q |
496 |
aaataaactattgaagttcacaagtgatactaatgtgaggcacactattaccccgttaaggtgactcataaacaatagtttattccttgtatttg |
590 |
Q |
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| T |
45698873 |
aaataaactattgaagttcacaagtgatactaatgtaaggcacactattaccacgttaaggtgactcataaacaatagtttattccttgtatttg |
45698779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Original strand, 13961376 - 13961405
Alignment:
| Q |
311 |
agagaaagtaaaaacacaatatgagtatga |
340 |
Q |
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| T |
13961376 |
agagaaagtaaaaacacaatatgagtatga |
13961405 |
T |
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