View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_high_13 (Length: 474)
Name: NF1386_high_13
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 5050670 - 5051087
Alignment:
| Q |
10 |
tcataggctttcattttataaccactttcccacacagctttagctattctccccgatgtgggacttataccagtgctaatatgctac---ccacacaaat |
106 |
Q |
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| T |
5050670 |
tcataggctttcattttataaccactttcccacacagcttcagctattctccccgatgtgggacttataccagtgctaatatgctactacccacacaaat |
5050769 |
T |
|
| Q |
107 |
tttgttaacaattctacataacgatcttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaacca |
206 |
Q |
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| T |
5050770 |
tttgttaacaattctacataaggatgttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaacca |
5050869 |
T |
|
| Q |
207 |
tgaatccaatgaccaacacaatcaatcttatcaatcttcaagcctccaacaaatattccatgagcactttgcaagaacacaacatcaccttcacataact |
306 |
Q |
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| T |
5050870 |
tgaatccaatgaccaacaca---------atcaatcttcaagcctccaacaaatattccatgagcacgttgcacgaacacaacatcaccttcacataact |
5050960 |
T |
|
| Q |
307 |
tcaaagagtacaaaaac-agccattcaaattttcccacaactcacaccaacatgaccattaaaaagatgttatttgcatgtctatcacttggaaaattaa |
405 |
Q |
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| T |
5050961 |
tcgaatagtataaaaacaagccattcaaattttcccacaactcacaccaacatgaccattaaaaagatgttatttgcatatctatcacttggaaaattaa |
5051060 |
T |
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| Q |
406 |
tgatgtctcaattttcatcattgttga |
432 |
Q |
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| T |
5051061 |
tgatgtctcaattttcatcattgttga |
5051087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 295
Target Start/End: Complemental strand, 51274824 - 51274658
Alignment:
| Q |
133 |
ttatgctatgttatggatgga-ttggaataggccacaatggaatatcaaa--aaatcatttacaacaattgaaacc-atgaatccaatgaccaacacaat |
228 |
Q |
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| T |
51274824 |
ttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccct |
51274725 |
T |
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| Q |
229 |
caatcttatcaatcttcaagcctccaacaaatattccatgagcactttgcaagaacacaacatcacc |
295 |
Q |
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| T |
51274724 |
caatctcgttagtcttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaacatcacc |
51274658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 51274498 - 51274356
Alignment:
| Q |
292 |
caccttcacataacttcaaagagtacaaaaaca-gccattcaaattttcccacaactcacaccaacatgaccattaaaaag-atgttatttgcatgtcta |
389 |
Q |
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| T |
51274498 |
caccttcacaaagcatcgaagagtacaaaaacaagccattcgaaattttccacgacacacaccaacatgaccattaaatagaatatcatttgctgatgca |
51274399 |
T |
|
| Q |
390 |
tcacttggaaaattaatgatgtctcaattttcatcattgttga |
432 |
Q |
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| T |
51274398 |
tcactaggaaaattaatgatttcacatttttcatcattgttga |
51274356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 38783390 - 38783346
Alignment:
| Q |
388 |
tatcacttggaaaattaatgatgtctcaattttcatcattgttga |
432 |
Q |
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| T |
38783390 |
tatcacttggaaaattaatgaggtcacatttttcaacattgttga |
38783346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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