View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_high_17 (Length: 427)
Name: NF1386_high_17
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 3804567 - 3804829
Alignment:
| Q |
14 |
agaccaaggaaaggtatcttttctattaataattttaaaatactagttgatattccaaaaatatccttgtaccaaactactcctaccttacattctagct |
113 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||| |||| |
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| T |
3804567 |
agaccaaagaaaggtatcttttctattaataattttaaaatactagttgatatttcaaaaatatccttggactaaactacttctaccttacattccagct |
3804666 |
T |
|
| Q |
114 |
gcctacaattaatgtaattctatcattaaagctattgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacataggtttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804667 |
gcctacaattaatgtaattctatcattaaagctattgcatgagttccaatccaagcctcacaaacacgtctctccctcttcacaagaatacataggtttt |
3804766 |
T |
|
| Q |
214 |
attgtggctattgatattctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804767 |
attgtggctattgatattctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
3804829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 27149980 - 27149785
Alignment:
| Q |
11 |
cacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatattccaaaaatatccttgtaccaaactactcctaccttacattcta |
110 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | |
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| T |
27149980 |
cacagaccaaggaaaggcattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttacattaca |
27149881 |
T |
|
| Q |
111 |
gctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacat |
206 |
Q |
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| T |
27149880 |
gctgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacat |
27149785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 8435452 - 8435257
Alignment:
| Q |
11 |
cacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatattccaaaaatatccttgtaccaaactactcctaccttacattcta |
110 |
Q |
| |
|
||||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | |
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| T |
8435452 |
cacagactaaagaaatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttacattaca |
8435353 |
T |
|
| Q |
111 |
gctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
8435352 |
gctgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacatgcttctccctcttcacaagaatacat |
8435257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 5165378 - 5165109
Alignment:
| Q |
15 |
gaccaaggaaaggtatcttttctattaataattttaaaatactagttgatattccaaaaatatccttgtaccaaactactcctaccttacattctagctg |
114 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |
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| T |
5165378 |
gaccaaggaaatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctacctta--------ctg |
5165287 |
T |
|
| Q |
115 |
cctacaattaatgtaattctatcattaaagctattgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacataggtttta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||| |||| ||||||||||||||||||| |||||| |
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| T |
5165286 |
cctacaattaatgtaattctatcattaaagctattgtatgagtatcaattcaagcctcacaaacacacctct-cctcttcacaagaatacatcagtttta |
5165188 |
T |
|
| Q |
215 |
t----------tgtggctattgatatt-------ctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
276 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5165187 |
ttctggtttaatgtggctattgatattctcacagctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
5165109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 3804895 - 3804952
Alignment:
| Q |
341 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatg |
398 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3804895 |
agagtagaaatgaagtttaaacatctagtcattctctatataaaaagagctttgtatg |
3804952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 8435156 - 8435099
Alignment:
| Q |
341 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8435156 |
agagtagaaatgaagtttaaacatccagtcattctctatataaagagagctttgtatg |
8435099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 5165043 - 5164986
Alignment:
| Q |
341 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatg |
398 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
5165043 |
agagtagaaatgaagtttaaacatcccgtcattctctatataaagagagctttgtatg |
5164986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 276
Target Start/End: Complemental strand, 8435255 - 8435222
Alignment:
| Q |
243 |
ttcaaattgaaaaaagtaggcaaactcccaccac |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
8435255 |
ttcaaattgaaaaaagtaggcaaactcccaccac |
8435222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 31742864 - 31742590
Alignment:
| Q |
11 |
cacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatattccaaaaatatccttgtaccaaactactcctaccttacattcta |
110 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
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| T |
31742864 |
cacagaccaagaaaatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactccttccttacc----- |
31742770 |
T |
|
| Q |
111 |
gctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacataggt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
31742769 |
---gcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggt |
31742673 |
T |
|
| Q |
211 |
tttat----------tgtggctattgatatt-------ctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
276 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31742672 |
tttattatggtttaatgtggctattgatattctcacagctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
31742590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 31742524 - 31742467
Alignment:
| Q |
341 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatg |
398 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31742524 |
agagtagaaatgaagtttaaccatccagtcattctctatataaagagagctttgtatg |
31742467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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