View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_high_18 (Length: 422)
Name: NF1386_high_18
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 55 - 394
Target Start/End: Original strand, 26257401 - 26257743
Alignment:
| Q |
55 |
ggtcacaagtactatggtttgatcatcttaagataataaagttctgattatggttcataattgctccatatgcatatacatttagcataacatgtaaact |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26257401 |
ggtcacaagtactatggtttgatcatcttaagataatatagttctgattatggttcataattgctccatatgcatatacatttagcataacatgtaa-ct |
26257499 |
T |
|
| Q |
155 |
acaactttattatttccatttgagaaactat----ctatacctatctagaaccacataataaatttttcactcaacaactcataattctaaggaaaggaa |
250 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26257500 |
acaactttattatttccatttgagaaactacgtacctatacctatctagaagcacataataaatttttcactcaacaactcataattctaaggaaaggaa |
26257599 |
T |
|
| Q |
251 |
aactcttcactaccaggatgcagaagcacaccttcaattagcataaaaaagtcaatagtcatgacaagaaagactaaagcatatgatagcttttattttg |
350 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26257600 |
aactcttcactaccaggatgcagaaccacaccttcaattagcataaaaaagtcaatagtcatgacaagaaagactaaagcatataatagcttttattttg |
26257699 |
T |
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| Q |
351 |
aagtagaaaacagaaggtaaattccaatgtcagtagcagatttt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26257700 |
aagtagaaaacagaaggtaaattccaatgtcagtagccgatttt |
26257743 |
T |
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