View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_high_20 (Length: 374)
Name: NF1386_high_20
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 52 - 344
Target Start/End: Original strand, 52096186 - 52096478
Alignment:
| Q |
52 |
aaacatccattgagcaaagacccccatatggctccatctggttcaatatgcatactattaataaaagttaaggcctttttcacttgtccgcttcgagcca |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52096186 |
aaacatccattgagcaaagacccccatatggctccatctggttcaatatgcatactattaataaaaattaaggcctttttcacttgtccgcttcgagcca |
52096285 |
T |
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| Q |
152 |
aaatatcaacgatgcatccatagtgttcaattgatggtgtgatgttatatttttcactcataattccaaataactgcgatgactccccaaacaaactttt |
251 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
52096286 |
aaatatcaacgatgcatccatagtgttcaatagatggtgtgatgttatatttttcactcataattccaaataaccgtgatgactccccaaacaaactttt |
52096385 |
T |
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| Q |
252 |
atgattgcaagcggtgagaaccccaacgaaagtaacctcattaggttttggtccaaccttctccatcttttcaaacagttccagtgccatttt |
344 |
Q |
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| T |
52096386 |
atgattgcaagcggtgagaaccccaacgaaagtaacctcattaggttttggtccaaccttctccatcttttcaaacagttccagtgccatttt |
52096478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 52 - 344
Target Start/End: Original strand, 36411694 - 36411986
Alignment:
| Q |
52 |
aaacatccattgagcaaagacccccatatggctccatctggttcaatatgcatactattaataaaagttaaggcctttttcacttgtccgcttcgagcca |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411694 |
aaacatccattgagcaaagacccccatatggctccatctggttcaatatgcatactattaataaaagttaaggcctttttcacttgtccgcttcgagcca |
36411793 |
T |
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| Q |
152 |
aaatatcaacgatgcatccatagtgttcaattgatggtgtgatgttatatttttcactcataattccaaataactgcgatgactccccaaacaaactttt |
251 |
Q |
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| T |
36411794 |
aaacatcaacaacacatccatagtgttcaatagatggtgtgatgttatatttttcactcataattccaaataaccgagctgactccccaaacaaactttt |
36411893 |
T |
|
| Q |
252 |
atgattgcaagcggtgagaaccccaacgaaagtaacctcattaggttttggtccaaccttctccatcttttcaaacagttccagtgccatttt |
344 |
Q |
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| T |
36411894 |
atgattgcaagcggtaagaaccccaacgaaagtaacctcattaggttttggtccaaccttctccatcttctcaaacagttccagtgccatttt |
36411986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2019480 - 2019528
Alignment:
| Q |
8 |
cgaataatatctacgaaaatgctaacaatggatattaaatctcaaaaca |
56 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2019480 |
cgaacaatatctacgaaaatgctaacaatggagattaaatctcaaaaca |
2019528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2022088 - 2022136
Alignment:
| Q |
8 |
cgaataatatctacgaaaatgctaacaatggatattaaatctcaaaaca |
56 |
Q |
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|||| ||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
2022088 |
cgaaaaatatctacgaaaatgctaacaatggagaatagatctcaaaaca |
2022136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2036209 - 2036257
Alignment:
| Q |
8 |
cgaataatatctacgaaaatgctaacaatggatattaaatctcaaaaca |
56 |
Q |
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|||| |||||||| |||||||||||||||||| | |||||||||||||| |
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| T |
2036209 |
cgaaaaatatctatgaaaatgctaacaatggagaataaatctcaaaaca |
2036257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 48204664 - 48204623
Alignment:
| Q |
15 |
tatctacgaaaatgctaacaatggatattaaatctcaaaaca |
56 |
Q |
| |
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|||||| |||||||||||||||||| | |||||||||||||| |
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| T |
48204664 |
tatctatgaaaatgctaacaatggagaataaatctcaaaaca |
48204623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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