View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_high_31 (Length: 273)
Name: NF1386_high_31
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 34451145 - 34450935
Alignment:
| Q |
52 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaa |
151 |
Q |
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| T |
34451145 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaa |
34451046 |
T |
|
| Q |
152 |
taaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaaaggatatcacatttcatcagatggtaagtagaaattttt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34451045 |
taaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaaaggatatcacatttcatcagatggtaagtagaaattttt |
34450946 |
T |
|
| Q |
252 |
acgcatattta |
262 |
Q |
| |
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||||||||||| |
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| T |
34450945 |
acgcatattta |
34450935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 34487938 - 34487778
Alignment:
| Q |
52 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaa |
151 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||| || || |||||||||| |
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| T |
34487938 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattggaacaaatccacaatacttttaccaacaataaggaaa |
34487839 |
T |
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| Q |
152 |
taaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaa |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
34487838 |
taaccacaaaagaaggctcccttcacttccttgcattagcatttcgtttgcttaggcaaaa |
34487778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 34475685 - 34475533
Alignment:
| Q |
52 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaa |
151 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| | ||| || || |||||||||| |
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| T |
34475685 |
attgattcattgcaacgtttgggaatatcttatcattttgaacttgaaattgatgaagcattggaacaaatccacaatacttttaccaacaataaggaaa |
34475586 |
T |
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| Q |
152 |
taaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgctt |
204 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34475585 |
taaccacagaagaaggttcccttcacttccttgcattagcatttcgtttgctt |
34475533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 34461917 - 34461745
Alignment:
| Q |
52 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaa |
151 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| ||||| ||||| | | | |||||||||| |
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| T |
34461917 |
attgactcattgcaacgtttgggaatatcttatcaatttgaacatgaaattgatgaagcgttagaacaaattcacaacaattttagtgacaataaggaaa |
34461818 |
T |
|
| Q |
152 |
taaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaaaggatatcacat |
224 |
Q |
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| ||| || |||||||| ||||||||| ||||| |||| |||||||||||||||| |||||||| ||||||| |
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| T |
34461817 |
tgacctcagaagaaggtgaccttcactttcttgcgttagtatttcgtttgcttaggcaaaaaggacatcacat |
34461745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 6128663 - 6128843
Alignment:
| Q |
52 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaa |
151 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||| || || ||||| |||||||||| |
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| T |
6128663 |
attgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaataaggaaa |
6128762 |
T |
|
| Q |
152 |
taaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaaaggatatcacatttcatcag |
232 |
Q |
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||||||| || |||||| ||||||||| ||||| |||| |||||||||||| || ||||||||||||| |||||||||| |
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| T |
6128763 |
taaccactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctctggcaaaaaggatatcaaatttcatcag |
6128843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 1595301 - 1595245
Alignment:
| Q |
52 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1595301 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaa |
1595245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 1595195 - 1595126
Alignment:
| Q |
161 |
aagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaaaggatatcacatttcatc |
230 |
Q |
| |
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|||||||| ||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
1595195 |
aagaaggtggccttcacttttgtgcattagcatttcgtttgcttaggcaaaaaggacatcacatttcatc |
1595126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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