View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_high_37 (Length: 239)

Name: NF1386_high_37
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_high_37
NF1386_high_37
[»] chr3 (4 HSPs)
chr3 (23-96)||(43374257-43374330)
chr3 (194-238)||(29303588-29303632)
chr3 (194-239)||(29320913-29320958)
chr3 (129-165)||(42615575-42615611)
[»] chr4 (2 HSPs)
chr4 (178-228)||(6228198-6228248)
chr4 (131-164)||(56540179-56540212)
[»] chr1 (1 HSPs)
chr1 (131-170)||(48183397-48183436)
[»] chr8 (1 HSPs)
chr8 (131-165)||(31166093-31166127)


Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 43374257 - 43374330
Alignment:
Q  23 aaccatcaactctacttgttttggatgaaccatcgaatcacttagatataccttctaaagaaatggttgaggtc 96  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||    
T  43374257 aaccatcaactctacttgttttggatgaaccaacaaatcacttggatataccttctaaagaaatgcttgaggtc 43374330  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 29303588 - 29303632
Alignment:
Q  194 gtaagagaaaccaaaatacaaatgcaaaacttcatctgtataaag 238  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  29303588 gtaagagaaactaaaatacaaatgcaaaacttcatctgcataaag 29303632  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 29320913 - 29320958
Alignment:
Q  194 gtaagagaaaccaaaatacaaatgcaaaacttcatctgtataaagt 239  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||    
T  29320913 gtaagagaaaccaaaatacaaatgcacaacttaatctgcataaagt 29320958  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 42615575 - 42615611
Alignment:
Q  129 tattttaaaattctttgttatatgtttgaatgagtta 165  Q
    |||||| |||||||||||||||||||||||| |||||    
T  42615575 tattttgaaattctttgttatatgtttgaataagtta 42615611  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 6228248 - 6228198
Alignment:
Q  178 ttatttaaactttgtggtaagagaaaccaaaatacaaatgcaaaacttcat 228  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  6228248 ttatttaaactttgtggtaagaaaaaccaaaaaacaaatgcaaaacttcat 6228198  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 56540212 - 56540179
Alignment:
Q  131 ttttaaaattctttgttatatgtttgaatgagtt 164  Q
    |||| |||||||||||||||||||||||||||||    
T  56540212 tttttaaattctttgttatatgtttgaatgagtt 56540179  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 48183397 - 48183436
Alignment:
Q  131 ttttaaaattctttgttatatgtttgaatgagttatattt 170  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  48183397 ttttgaaattctttgttatatgtttaaatgagttatattt 48183436  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 31166127 - 31166093
Alignment:
Q  131 ttttaaaattctttgttatatgtttgaatgagtta 165  Q
    |||| ||||||||||||||||||||||||||||||    
T  31166127 tttttaaattctttgttatatgtttgaatgagtta 31166093  T

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