View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_high_4 (Length: 768)
Name: NF1386_high_4
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 352 - 697
Target Start/End: Original strand, 42357909 - 42358234
Alignment:
| Q |
352 |
tttgaattggtatataggctttaa-----acaatgtacatgtactgtagtgcattgtgtggcagtttagttatcacgcacgctgaagagtgaagatccct |
446 |
Q |
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| T |
42357909 |
tttgaattggtatataggctttaatttaaacaatgtacatgtactgta-----ttgtgtggcagtttagttatcacgcacgctgaagagtgaagatccct |
42358003 |
T |
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| Q |
447 |
ttctcctttactttcccctcttttttctctctgagagagagactgagtgaatgaatactttatacgctgcttctctaattaccaatcctaatttcctttc |
546 |
Q |
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| T |
42358004 |
ttctccttcactttcccctcttttttgtctctgagt------ctgagtgaatgaatactttatacgctgcttctct---tcccaatcctaatttcctttc |
42358094 |
T |
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| Q |
547 |
ttcttttctattctgcatgagtatgagtatgagtatgtgtactttgatattcatattaatgcacgcagagacgacagagccgaattgtatatatagcatc |
646 |
Q |
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| T |
42358095 |
ttcttttctattctgcatga------gtatgagtatgtgtacttcgatattcatattaatgcacgcagagacgacagagccgaattgtatatatagc--- |
42358185 |
T |
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| Q |
647 |
taatctaagcatagcatactgacagtgtatgtaaaagataaccaaccacct |
697 |
Q |
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| T |
42358186 |
--atctaagcatagcatactgacagtgtatgtaaaagataaccaaccacct |
42358234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 42357334 - 42357456
Alignment:
| Q |
84 |
tatagcagtttagagtttaattttcatatattaccaaaacaatgcgcaaggaaagacacaaccacctaataactttgcgtttagttatagtttcaaccat |
183 |
Q |
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| T |
42357334 |
tatagcagtttagagtttaattttcatatattaccaaaacaatgcgcaaggaaagacacaaccacctaacaactttgcgtttagttatagtttcaaccat |
42357433 |
T |
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| Q |
184 |
tattatctatcgtactagacaaa |
206 |
Q |
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| T |
42357434 |
tatcatctatcgtactagacaaa |
42357456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 42357824 - 42357862
Alignment:
| Q |
280 |
tattttatcactggtattggtatatcattttttgaatta |
318 |
Q |
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| T |
42357824 |
tattttatcactggtattggtatatcattttatgaatta |
42357862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 42357785 - 42357814
Alignment:
| Q |
212 |
attaactgattatatactccttttaataaa |
241 |
Q |
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| T |
42357785 |
attaactgattatatactccttttaataaa |
42357814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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