View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_high_42 (Length: 208)

Name: NF1386_high_42
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_high_42
NF1386_high_42
[»] chr4 (4 HSPs)
chr4 (1-84)||(2019480-2019563)
chr4 (1-84)||(2036209-2036292)
chr4 (1-84)||(1990514-1990597)
chr4 (36-84)||(2022088-2022136)
[»] chr7 (1 HSPs)
chr7 (34-77)||(48204621-48204664)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2019563 - 2019480
Alignment:
Q  1 accaccttcatttgatggcatattgttggctatggtgttttgagatttaatatccattgttagcattttcgtagatattattcg 84  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  2019563 accaccttcatttgatggcatattgttggccatggtgttttgagatttaatctccattgttagcattttcgtagatattgttcg 2019480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2036292 - 2036209
Alignment:
Q  1 accaccttcatttgatggcatattgttggctatggtgttttgagatttaatatccattgttagcattttcgtagatattattcg 84  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||||||| |||||||| ||||    
T  2036292 accaccttcatttgatagcatattgttggccatggtgttttgagatttattctccattgttagcattttcatagatatttttcg 2036209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1990597 - 1990514
Alignment:
Q  1 accaccttcatttgatggcatattgttggctatggtgttttgagatttaatatccattgttagcattttcgtagatattattcg 84  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||| |||||||  ||||||| ||||    
T  1990597 accaccttcatttgatggcaaattgttggccatggtgttttgagatttattctccattgttaccattttcaaagatatttttcg 1990514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 2022136 - 2022088
Alignment:
Q  36 tgttttgagatttaatatccattgttagcattttcgtagatattattcg 84  Q
    ||||||||||| || | ||||||||||||||||||||||||||| ||||    
T  2022136 tgttttgagatctattctccattgttagcattttcgtagatatttttcg 2022088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 48204621 - 48204664
Alignment:
Q  34 ggtgttttgagatttaatatccattgttagcattttcgtagata 77  Q
    |||||||||||||||| | |||||||||||||||||| ||||||    
T  48204621 ggtgttttgagatttattctccattgttagcattttcatagata 48204664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University