View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_high_8 (Length: 504)

Name: NF1386_high_8
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_high_8
NF1386_high_8
[»] chr8 (19 HSPs)
chr8 (142-326)||(22324549-22324733)
chr8 (186-326)||(35806791-35806931)
chr8 (186-326)||(21525355-21525495)
chr8 (142-321)||(42013825-42014004)
chr8 (186-326)||(26021392-26021533)
chr8 (186-326)||(33934360-33934500)
chr8 (144-326)||(42072383-42072565)
chr8 (207-327)||(24065291-24065411)
chr8 (186-323)||(19334779-19334917)
chr8 (241-326)||(16523158-16523243)
chr8 (189-317)||(16818973-16819105)
chr8 (243-315)||(16591377-16591449)
chr8 (207-316)||(43282852-43282962)
chr8 (437-485)||(42358186-42358234)
chr8 (207-304)||(21488084-21488181)
chr8 (207-275)||(34697431-34697500)
chr8 (186-312)||(10112042-10112170)
chr8 (186-312)||(2271197-2271318)
chr8 (139-234)||(16523018-16523114)
[»] chr7 (17 HSPs)
chr7 (142-326)||(34707069-34707253)
chr7 (186-326)||(44164734-44164874)
chr7 (186-326)||(10576670-10576810)
chr7 (141-324)||(32876523-32876706)
chr7 (186-326)||(24320430-24320570)
chr7 (197-326)||(34259526-34259655)
chr7 (142-324)||(29555932-29556114)
chr7 (186-326)||(29238134-29238274)
chr7 (204-326)||(29981104-29981226)
chr7 (186-326)||(33057648-33057789)
chr7 (186-317)||(19334560-19334693)
chr7 (186-326)||(17303105-17303248)
chr7 (186-326)||(10334173-10334315)
chr7 (212-312)||(9770682-9770782)
chr7 (186-312)||(26284383-26284510)
chr7 (233-312)||(15017817-15017896)
chr7 (186-281)||(41853128-41853226)
[»] chr6 (16 HSPs)
chr6 (142-326)||(9231845-9232029)
chr6 (142-326)||(24694642-24694826)
chr6 (186-321)||(14309794-14309929)
chr6 (186-326)||(13627537-13627677)
chr6 (215-327)||(1727923-1728035)
chr6 (186-326)||(28750641-28750783)
chr6 (186-317)||(27863695-27863828)
chr6 (191-316)||(13103119-13103246)
chr6 (207-312)||(34103703-34103808)
chr6 (207-283)||(11212689-11212765)
chr6 (142-238)||(11084563-11084659)
chr6 (186-283)||(11279536-11279634)
chr6 (245-327)||(24497564-24497646)
chr6 (263-323)||(11084664-11084724)
chr6 (241-281)||(8412717-8412757)
chr6 (189-250)||(24500767-24500830)
[»] chr2 (23 HSPs)
chr2 (142-326)||(14942035-14942219)
chr2 (144-326)||(42769749-42769931)
chr2 (144-326)||(29846396-29846579)
chr2 (144-326)||(40277279-40277461)
chr2 (142-325)||(14186430-14186613)
chr2 (15-140)||(24145323-24145448)
chr2 (142-320)||(19181501-19181679)
chr2 (186-328)||(6318446-6318592)
chr2 (186-281)||(3597903-3597998)
chr2 (186-286)||(1387319-1387420)
chr2 (186-317)||(14539704-14539837)
chr2 (186-315)||(33009667-33009799)
chr2 (186-307)||(41674716-41674840)
chr2 (210-324)||(43139766-43139882)
chr2 (186-326)||(3956567-3956709)
chr2 (186-312)||(40780050-40780179)
chr2 (186-317)||(28321703-28321836)
chr2 (186-281)||(23685406-23685503)
chr2 (207-312)||(2888058-2888164)
chr2 (290-326)||(3597881-3597917)
chr2 (186-265)||(32486239-32486320)
chr2 (210-281)||(25665244-25665316)
chr2 (368-399)||(24145301-24145332)
[»] chr4 (27 HSPs)
chr4 (144-326)||(1535726-1535908)
chr4 (142-326)||(25954703-25954887)
chr4 (142-326)||(34240946-34241130)
chr4 (142-326)||(37801255-37801439)
chr4 (142-326)||(49284310-49284494)
chr4 (142-304)||(52632471-52632633)
chr4 (186-326)||(36012176-36012316)
chr4 (142-326)||(35018889-35019072)
chr4 (189-304)||(46583554-46583669)
chr4 (212-323)||(16338207-16338318)
chr4 (186-326)||(17888541-17888683)
chr4 (142-252)||(16338309-16338419)
chr4 (186-326)||(31377385-31377526)
chr4 (207-317)||(20818584-20818695)
chr4 (186-316)||(54090176-54090307)
chr4 (186-325)||(46473989-46474130)
chr4 (216-323)||(10094387-10094495)
chr4 (186-314)||(11054448-11054581)
chr4 (186-282)||(322584-322682)
chr4 (186-317)||(12792231-12792364)
chr4 (233-326)||(47084056-47084149)
chr4 (191-312)||(9742538-9742661)
chr4 (258-326)||(36851378-36851446)
chr4 (186-312)||(50328791-50328919)
chr4 (186-317)||(35322704-35322837)
chr4 (207-326)||(19124729-19124849)
chr4 (233-281)||(5780790-5780838)
[»] chr3 (29 HSPs)
chr3 (186-326)||(21853194-21853334)
chr3 (141-326)||(13856051-13856236)
chr3 (142-326)||(44994959-44995144)
chr3 (144-323)||(40845911-40846090)
chr3 (186-326)||(8950495-8950635)
chr3 (186-326)||(32352844-32352984)
chr3 (142-326)||(5391411-5391594)
chr3 (186-304)||(23467507-23467625)
chr3 (186-326)||(3178699-3178840)
chr3 (186-327)||(1781757-1781900)
chr3 (186-326)||(10839371-10839513)
chr3 (186-326)||(43347327-43347468)
chr3 (186-326)||(20382514-20382655)
chr3 (186-326)||(19649363-19649506)
chr3 (186-326)||(36539627-36539769)
chr3 (190-312)||(54546904-54547027)
chr3 (195-317)||(22845362-22845484)
chr3 (187-312)||(8926762-8926889)
chr3 (186-312)||(33103739-33103866)
chr3 (209-322)||(46685779-46685891)
chr3 (196-286)||(47889731-47889823)
chr3 (186-324)||(6280352-6280491)
chr3 (211-319)||(51336231-51336339)
chr3 (186-278)||(48206849-48206943)
chr3 (186-314)||(36825965-36826087)
chr3 (252-316)||(27642723-27642787)
chr3 (190-317)||(19644327-19644458)
chr3 (186-281)||(791812-791906)
chr3 (214-317)||(39352219-39352321)
[»] chr5 (27 HSPs)
chr5 (186-326)||(38397595-38397735)
chr5 (142-323)||(23218438-23218619)
chr5 (142-326)||(37169024-37169208)
chr5 (186-326)||(6257401-6257541)
chr5 (186-326)||(16618561-16618701)
chr5 (186-325)||(39862479-39862618)
chr5 (189-326)||(15631613-15631751)
chr5 (186-326)||(8456954-8457096)
chr5 (186-312)||(10081140-10081268)
chr5 (186-324)||(36769067-36769206)
chr5 (189-312)||(614397-614522)
chr5 (186-326)||(11856290-11856432)
chr5 (207-317)||(9737981-9738094)
chr5 (186-314)||(25560330-25560460)
chr5 (186-314)||(42119617-42119747)
chr5 (186-315)||(27916134-27916266)
chr5 (209-317)||(29491414-29491521)
chr5 (210-324)||(33271263-33271377)
chr5 (207-317)||(6174762-6174874)
chr5 (207-327)||(3341110-3341230)
chr5 (215-326)||(10115185-10115297)
chr5 (207-317)||(29790219-29790328)
chr5 (212-326)||(10052491-10052606)
chr5 (233-281)||(19322058-19322106)
chr5 (208-256)||(33188403-33188451)
chr5 (186-259)||(22903252-22903329)
chr5 (207-303)||(15475408-15475505)
[»] chr1 (26 HSPs)
chr1 (186-326)||(49902465-49902605)
chr1 (142-326)||(42517285-42517473)
chr1 (143-321)||(3346740-3346918)
chr1 (186-326)||(48392397-48392537)
chr1 (142-326)||(7742770-7742954)
chr1 (189-326)||(5974988-5975125)
chr1 (142-326)||(10156007-10156191)
chr1 (186-326)||(47022699-47022839)
chr1 (142-304)||(23908238-23908400)
chr1 (142-304)||(29149561-29149723)
chr1 (189-326)||(38859849-38859988)
chr1 (186-326)||(10907639-10907781)
chr1 (207-327)||(30745361-30745482)
chr1 (207-327)||(30766812-30766933)
chr1 (214-312)||(5558334-5558431)
chr1 (186-317)||(42456566-42456700)
chr1 (186-312)||(26835333-26835461)
chr1 (246-324)||(37189697-37189774)
chr1 (211-326)||(26511625-26511739)
chr1 (207-275)||(30252787-30252856)
chr1 (207-310)||(13131914-13132017)
chr1 (186-311)||(14796871-14796998)
chr1 (186-311)||(14805745-14805872)
chr1 (186-326)||(44107382-44107521)
chr1 (207-283)||(45968685-45968761)
chr1 (208-250)||(8430508-8430551)
[»] scaffold0079 (2 HSPs)
scaffold0079 (212-323)||(54542-54653)
scaffold0079 (142-252)||(54441-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (207-312)||(34457-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (233-312)||(20836-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (236-281)||(85547-85592)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 22324549 - 22324733
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324549 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 22324648  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  22324649 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagcc 22324733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 35806791 - 35806931
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35806791 ttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 35806890  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  35806891 gagatttacacaagaaattgcaaaaaatttggcccggagcc 35806931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 21525355 - 21525495
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  21525355 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 21525454  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | ||||||||||||||||||||||||||| |||||||||    
T  21525455 gggatttacacaagaaattgcaaaaaatttgacccggagcc 21525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 142 - 321
Target Start/End: Original strand, 42013825 - 42014004
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||| |||||||||||||||||| ||          || ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42013825 agtggcggagcctgaaatattgtaaagcccgggcaaaaaaaaaatttcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatat 42013924  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccg 321  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  42013925 aaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccg 42014004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 26021392 - 26021533
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  26021392 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcat 26021491  T
Q  285 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    || | |||||| |||||||||||||||||||||| |||||||    
T  26021492 agggatttacaaaagaaattgcaaaaaatttggcacggagcc 26021533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 33934500 - 33934360
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  33934500 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcata 33934401  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |   |||||| ||||||||||||||||||||||| ||||||    
T  33934400 ggaatttacaaaagaaattgcaaaaaatttggcctggagcc 33934360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 144 - 326
Target Start/End: Original strand, 42072383 - 42072565
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 243  Q
    |||||||||||| |||||||||||||||| ||          ||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||    
T  42072383 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaa 42072482  T
Q  244 agaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||    
T  42072483 agaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcc 42072565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 207 - 327
Target Start/End: Original strand, 24065291 - 24065411
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 306  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||| |||| |  |||||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaattgc 24065390  T
Q  307 aaaaaatttggcccggagcct 327  Q
    ||||  |||||||| ||||||    
T  24065391 aaaagttttggcccagagcct 24065411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 186 - 323
Target Start/End: Original strand, 19334779 - 19334917
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| | ||||||||| | ||||||||| ||||||||    
T  19334779 ttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcat 19334878  T
Q  285 agaggtttacacaagaaattgcaaaaaatttggcccgga 323  Q
    |    |||| | ||||||||||||||||||||| |||||    
T  19334879 aagaatttatataagaaattgcaaaaaatttgggccgga 19334917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 326
Target Start/End: Original strand, 16523158 - 16523243
Alignment:
Q  241 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | |||||| | ||||||| ||||||||||| ||||||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcc 16523243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 16819105 - 16818973
Alignment:
Q  189 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatg---taaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    ||||||||||||||||  | | |||| |||||||||||||||||||||| |     || ||||||| |||||||||||||| |||||||||||||||||     
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaa 16819006  T
Q  285 agaggtttacacaagaaattgcaaaaaatttgg 317  Q
     ||| |||||| |||||||||||||||||||||    
T  16819005 ggagatttacaaaagaaattgcaaaaaatttgg 16818973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 16591449 - 16591377
Alignment:
Q  243 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaattt 315  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  |||||| |||||||||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaattt 16591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 43282962 - 43282852
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatg-taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 305  Q
    |||||||||||| |||||||||||||||||| |  ||| |||||| |||||||||||||||||||||||| ||||||| |    |||||| |||||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacataagaaattg 43282863  T
Q  306 caaaaaatttg 316  Q
     ||||||||||    
T  43282862 taaaaaatttg 43282852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 42358234 - 42358186
Alignment:
Q  437 aggtggttggttatcttttacatacactgtcagtatgctatgcttagat 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42358234 aggtggttggttatcttttacatacactgtcagtatgctatgcttagat 42358186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 21488084 - 21488181
Alignment:
Q  207 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 304  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||| ||| ||| ||||||||||||| ||   |||||||||||||||    
T  21488084 tacataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaatt 21488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 34697500 - 34697431
Alignment:
Q  207 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgcccaatttatagggatttatataa 275  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| | |||||||||| |||||||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 10112042 - 10112170
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||| ||||||||||  | ||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||| |  ||||||||||||||| |    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaa 10112141  T
Q  284 tagaggtttacacaagaaattgcaaaaaa 312  Q
     ||   |||||| || |||||||||||||    
T  10112142 gaggaatttacataaaaaattgcaaaaaa 10112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 2271197 - 2271318
Alignment:
Q  186 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||||||||||||||| ||  ||||||||||||| |||       |||||||| |||||||||| || ||| ||||||| |||||||||||||||||    
T  2271197 ttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattca 2271289  T
Q  284 tagaggtttacacaagaaattgcaaaaaa 312  Q
        | |||||| ||||||||||||||||    
T  2271290 gcatgatttacataagaaattgcaaaaaa 2271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 16523018 - 16523114
Alignment:
Q  139 ataagtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttat-agggcgtacataagaaattgcaagcaaataataa 234  Q
    ||||||||||||||||||| |||||||||||||| |           ||||||||||||||| ||||  | ||||| ||||||||||||||||||||    
T  16523018 ataagtggcggagccagaattattgtaaagcccgggtaaaaaaaaatttgcaacacatttatgagggtttgcataaaaaattgcaagcaaataataa 16523114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 34707069 - 34707253
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||| ||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707069 agtggcggagccaggaatattctaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 34707168  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  34707169 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 34707253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 44164874 - 44164734
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44164874 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 44164775  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||  |||||||||||||||||||||||||||||||||||||    
T  44164774 gaaatttacacaagaaattgcaaaaaatttggcccggagcc 44164734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 10576670 - 10576810
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10576670 ttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 10576769  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  10576770 gggatttacacaagaaattgcaaaaaatttggcccggagcc 10576810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 141 - 324
Target Start/End: Complemental strand, 32876706 - 32876523
Alignment:
Q  141 aagtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 240  Q
    ||||||||||||||| |||||||||||||||| ||          ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32876706 aagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatg 32876607  T
Q  241 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggag 324  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  32876606 taaagaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccggag 32876523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 24320570 - 24320430
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  24320570 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcgta 24320471  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |   |||||||||||||||||||||||||||||||||||||    
T  24320470 ggaatttacacaagaaattgcaaaaaatttggcccggagcc 24320430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 34259526 - 34259655
Alignment:
Q  197 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 34259625  T
Q  297 aagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||| |||||||||||||    
T  34259626 aagaaattgcaaaaaaattggcccggagcc 34259655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 29556114 - 29555932
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||  ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29556114 agtggcggagccaggaatattgtaaagcccaggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 29556015  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggag 324  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||   ||||||||||||||||  ||||| |||||||||||    
T  29556014 aaagaaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattgtcaaaaaattggcccggag 29555932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 29238274 - 29238134
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||    
T  29238274 ttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcata 29238175  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | ||||||||||||||||||||||| |||||||||||||    
T  29238174 gggatttacacaagaaattgcaaaaaaattggcccggagcc 29238134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 29981226 - 29981104
Alignment:
Q  204 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaat 303  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||   |||||||||||||||||||| | ||||||||||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaat 29981127  T
Q  304 tgcaaaaaatttggcccggagcc 326  Q
    ||||||| | |||||||||||||    
T  29981126 tgcaaaagaattggcccggagcc 29981104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 33057789 - 33057648
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||  ||||||||||||  |||||||||||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  285 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    || | |||||| ||||||||| |||||| |||| ||||||||    
T  33057689 agggatttacataagaaattgaaaaaaaattgggccggagcc 33057648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 19334693 - 19334560
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||| |||||||||||||||||    
T  19334693 ttgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattca 19334594  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttgg 317  Q
    |||   |||||| |||||||||||||||| ||||    
T  19334593 taggtatttacataagaaattgcaaaaaaattgg 19334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 17303248 - 17303105
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| | || ||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  283 atagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||||   |||||| |||||||||||||||| ||||  |||||||    
T  17303148 ataggaatttacataagaaattgcaaaaaaattgggtcggagcc 17303105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 10334173 - 10334315
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |  |||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
     ||   |||||| |||||||||||||||| |||| || |||||    
T  10334273 gaggaatttacataagaaattgcaaaaaaattgggccagagcc 10334315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 9770682 - 9770782
Alignment:
Q  212 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 311  Q
    ||||||||||||||||||||| |||| | ||||||||||| |||||| |||| | |||||||||||||||||    | |||||| |||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaa 9770781  T
Q  312 a 312  Q
    |    
T  9770782 a 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 26284510 - 26284383
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||   | || |||||||||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttata-ctagttttataagaaattcag 26284412  T
Q  285 agag-gtttacacaagaaattgcaaaaaa 312  Q
    || |  |||||| ||||||||||||||||    
T  26284411 agggattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 15017817 - 15017896
Alignment:
Q  233 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 312  Q
    ||||||| ||||||||||| |||||||||| |  ||||||||||||||||| ||   |||||| ||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 41853128 - 41853226
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    ||||||||||||||||| ||  || |||  ||||||||||||||||||  ||||||| |||| |||||| |||| ||||||| ||||| ||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 9232029 - 9231845
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9232029 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgt 9231930  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  9231929 aaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaaattggcccggagcc 9231845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 24694826 - 24694642
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694826 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 24694727  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24694726 aaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 24694642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 186 - 321
Target Start/End: Complemental strand, 14309929 - 14309794
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309929 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 14309830  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccg 321  Q
    | | ||||||||||||||||||||||||||||||||    
T  14309829 gggatttacacaagaaattgcaaaaaatttggcccg 14309794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 13627537 - 13627677
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  13627537 ttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcata 13627636  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  13627637 gggatttacacaagaaattgcaaaaaatttggcccggagcc 13627677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 215 - 327
Target Start/End: Complemental strand, 1728035 - 1727923
Alignment:
Q  215 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatt 314  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatt 1727936  T
Q  315 tggcccggagcct 327  Q
    |||||||||||||    
T  1727935 tggcccggagcct 1727923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 28750783 - 28750641
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
     |    |||||| |||||||||||||||| ||||||| |||||    
T  28750683 gaagaatttacataagaaattgcaaaaaaattggcccagagcc 28750641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 27863695 - 27863828
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||     
T  27863695 ttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcag 27863794  T
Q  285 agaggtttacacaag-aaattgcaaaaaatttgg 317  Q
    |||  |||||| ||| |||||||||||| |||||    
T  27863795 agaaatttacataagaaaattgcaaaaagtttgg 27863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 316
Target Start/End: Complemental strand, 13103246 - 13103119
Alignment:
Q  191 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 288  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||  | ||||||||||||||||| ||      
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  289 gtttacacaagaaattgcaaaaaatttg 316  Q
     |||||| || |||||||||||||||||    
T  13103146 atttacataaaaaattgcaaaaaatttg 13103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 34103703 - 34103808
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 306  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||| ||   |||||| || ||||| |    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacataataaattac 34103802  T
Q  307 aaaaaa 312  Q
    ||||||    
T  34103803 aaaaaa 34103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 11212689 - 11212765
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| || |||||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 11084563 - 11084659
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 238  Q
    |||||||||||||| |||||||||||| ||| ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084563 agtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||||| || |||||||| | |||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 24497646 - 24497564
Alignment:
Q  245 gaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcct 327  Q
    ||||||||||||||||||||| ||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggagcct 24497564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 11084664 - 11084724
Alignment:
Q  263 gggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccgga 323  Q
    ||| ||||||||||||||||||||   ||||||||||||||||||||||| ||||| ||||    
T  11084664 ggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggctcgga 11084724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  241 taaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  189 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 250  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 14942219 - 14942035
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14942219 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatgt 14942120  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  14942119 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 14942035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 42769931 - 42769749
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 243  Q
    |||||||||||| |||||||||||||||| ||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42769931 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaa 42769832  T
Q  244 agaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  42769831 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 42769749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 144 - 326
Target Start/End: Original strand, 29846396 - 29846579
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnnn-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 242  Q
    |||||||||||| |||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846396 tggcggagccaggaatattgtaaagcccgagcgaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 29846495  T
Q  243 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  29846496 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 29846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 40277461 - 40277279
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 243  Q
    |||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277461 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 40277362  T
Q  244 agaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||||||||||||||||| |||| | |||||| || |||||||||||||||||||||||||||    
T  40277361 agaaattgcccaatttatagggatttatataagaaatttatagggatttacataaaaaattgcaaaaaatttggcccggagcc 40277279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 14186613 - 14186430
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| ||||||||||||| || ||          |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14186613 agtggcggagccaggaatattgtaaagctcgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtgt 14186514  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagc 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  14186513 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagc 14186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 24145448 - 24145323
Alignment:
Q  15 gaaccataaaatcaaatttaagattttaaaacaaagtgaagttggagggaaaacataggatttgaaaaatttagggataaaatgtgacccacatattaaa 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24145448 gaaccacaaaatcaaatttaagattttaaaacaaagtgaagttggagggaaaacataggatttgaaaaatttagggataaaatgtgaccaacatattaaa 24145349  T
Q  115 aacatcacaattattatgattatgat 140  Q
    ||||||||||||||||||||||||||    
T  24145348 aacatcacaattattatgattatgat 24145323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 142 - 320
Target Start/End: Original strand, 19181501 - 19181679
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| ||||||||||||||||  |          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19181501 agtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgt 19181600  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggccc 320  Q
    |||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  19181601 aaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggccc 19181679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 186 - 328
Target Start/End: Complemental strand, 6318592 - 6318446
Alignment:
Q  186 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  283 atagaggtttacacaagaaattg-caaaaaatttggcccggagccta 328  Q
    |||| | |||||| |||||||||  |||||| |||| ||||||||||    
T  6318492 atagggatttacataagaaattgaaaaaaaaattgggccggagccta 6318446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 3597998 - 3597903
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  3597998 ttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 1387420 - 1387319
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    ||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||    
T  1387420 ttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattcat 1387321  T
Q  285 ag 286  Q
    ||    
T  1387320 ag 1387319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 14539837 - 14539704
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||| |  || ||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||    
T  14539837 ttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattca 14539738  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttgg 317  Q
     ||    ||||| |||||||||||||||||||||    
T  14539737 gaggaaattacataagaaattgcaaaaaatttgg 14539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 33009667 - 33009799
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    ||||||||| |||||| |||  ||||||| ||||||||||||||||||||  ||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  33009667 ttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaattc 33009766  T
Q  283 atagaggtttacacaagaaattgcaaaaaattt 315  Q
    |||| | |||| | ||||||||| |||||||||    
T  33009767 atagggatttatataagaaattgtaaaaaattt 33009799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 41674840 - 41674716
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    |||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||||| || ||||||||| ||||||    
T  41674840 ttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattc 41674741  T
Q  283 atagaggtttacacaagaaattgca 307  Q
    | |||| |||||| |||||||||||    
T  41674740 agagagatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 43139766 - 43139882
Alignment:
Q  210 ataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgca 307  Q
    |||||||||||||||||||||||||||||  | |||||||||||| |||||||||||| ||||||||||||||| | ||    ||||| |||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaaattgca 43139865  T
Q  308 aaaaatttggcccggag 324  Q
    ||||| |||| ||||||    
T  43139866 aaaaaattggaccggag 43139882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 3956567 - 3956709
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| | |||||||||| |||||||| |||| ||||||||| |||||||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattca 3956666  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||| | |||||| || |||||| |||   ||||| ||||||||    
T  3956667 tagggatttacataaaaaattgaaaattttttgggccggagcc 3956709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 40780050 - 40780179
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg-atttatataagaaattc 282  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| |||||| | |||||||||||  ||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  283 atagaggtttacacaagaaattgcaaaaaa 312  Q
    | ||   |||||| |||||||| |||||||    
T  40780150 agaggaatttacataagaaattacaaaaaa 40780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 28321836 - 28321703
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || |||||||||||||||||| || ||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T
Q  284 -tagaggtttacacaagaaattgcaaaaaatttgg 317  Q
      |||  |||||| |||||||||||||||| ||||    
T  28321736 ggaga-atttacataagaaattgcaaaaaaattgg 28321703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| |||||| | |||||||| ||||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 2888058 - 2888164
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 305  Q
    |||||||||  |||| ||||| |||||||||| | |||| ||||||  |||||||||||  ||||||||| |||||||||||| |||||| ||||||||     
T  2888058 tacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaatta 2888157  T
Q  306 caaaaaa 312  Q
    |||||||    
T  2888158 caaaaaa 2888164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 3597917 - 3597881
Alignment:
Q  290 tttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||||||||||||||||    
T  3597917 tttacacaagaaattgcaaaaaatttggcccggagcc 3597881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 32486239 - 32486320
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg 265  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| ||||||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggg 32486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  210 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    |||| |||||||||||||||||| ||||||  |||||||||| |||||||||||    |||||||||||||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 399
Target Start/End: Complemental strand, 24145332 - 24145301
Alignment:
Q  368 tgattatgattgtgatgtaagatgtatatgtt 399  Q
    ||||||||||||||||||||||||||||||||    
T  24145332 tgattatgattgtgatgtaagatgtatatgtt 24145301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 144 - 326
Target Start/End: Original strand, 1535726 - 1535908
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 243  Q
    |||||||||||| |||||||||||||||| ||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1535726 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaa 1535825  T
Q  244 agaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  1535826 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 1535908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 25954703 - 25954887
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25954703 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 25954802  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  25954803 aaagaaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccggagcc 25954887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 34240946 - 34241130
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34240946 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaattttacaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 34241045  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  34241046 aaagaaattgcccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccggagcc 34241130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 37801439 - 37801255
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801439 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 37801340  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  37801339 aaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattgcaaaaaatttagcccggagcc 37801255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 49284310 - 49284494
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| ||||||||||| |||| ||          |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49284310 agtggcggagccaggaatattgtaaaacccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatgt 49284409  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  49284410 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 49284494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 142 - 304
Target Start/End: Original strand, 52632471 - 52632633
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52632471 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatgt 52632570  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  52632571 aaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 36012316 - 36012176
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36012316 ttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 36012217  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | ||||||||| |||||||||||||||||||||| ||||    
T  36012216 gggatttacacaaaaaattgcaaaaaatttggcccgaagcc 36012176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 35018889 - 35019072
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| ||||||||||||||||  |          |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  35018889 agtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatgt 35018988  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||||||||| || |||||||| || |||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||    
T  35018989 aaagaaattacctaatttataagggtttatataagaaattcatag-gatttacacaagaaattgtaaaaaatttggcccagagcc 35019072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 46583669 - 46583554
Alignment:
Q  189 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 288  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  46583669 caacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcataggg 46583570  T
Q  289 gtttacacaagaaatt 304  Q
     ||||||||| |||||    
T  46583569 atttacacaaaaaatt 46583554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 16338318 - 16338207
Alignment:
Q  212 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||||| ||||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 16338219  T
Q  312 atttggcccgga 323  Q
    | ||||||||||    
T  16338218 aattggcccgga 16338207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 17888683 - 17888541
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||   |||||| ||||||||| ||||||||||| ||||||||    
T  17888583 taggaatttacataagaaattgaaaaaaatttgggccggagcc 17888541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 16338419 - 16338309
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    ||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338419 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 16338320  T
Q  242 aaagaaattgc 252  Q
    |||||||||||    
T  16338319 aaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 31377385 - 31377526
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |  ||||||||||||||||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattca 31377484  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||| | |||||| ||||||||| ||||||||||| ||||||||    
T  31377485 tagggatttacataagaaattg-aaaaaatttgggccggagcc 31377526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 20818584 - 20818695
Alignment:
Q  207 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 305  Q
    ||||||||||||||||| |||||||| ||||||| |||| |||||| ||||||||||||  |||||||||||||||||||| | |||||| |||||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttacaaaagaaattg 20818683  T
Q  306 caaaaaatttgg 317  Q
    ||||||||||||    
T  20818684 caaaaaatttgg 20818695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 54090176 - 54090307
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| |  ||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  285 agaggtttacacaagaaattgcaaaaaatttg 316  Q
    || | |||||| ||| ||||||||||||||||    
T  54090276 agggatttacaaaaggaattgcaaaaaatttg 54090307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 46473989 - 46474130
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||  ||||||||| || ||||||||| |||||||    
T  46473989 ttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattca 46474088  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagc 325  Q
     ||   |||||| ||||||||||||||||||||| |||||||    
T  46474089 caggaatttacataagaaattgcaaaaaatttgggccggagc 46474130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 10094495 - 10094387
Alignment:
Q  216 aattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatt 314  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||||||||||| ||||||||||||||||| |||  |||||| |||||||| |||||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatt 10094396  T
Q  315 tggcccgga 323  Q
    ||| |||||    
T  10094395 tgggccgga 10094387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 314
Target Start/End: Original strand, 11054448 - 11054581
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgcccaatttatagggatttatataagaaat 280  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| |||||||||||||||| | ||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  281 tcatagaggtttacacaagaaattgcaaaaaatt 314  Q
    |||||| | |||||| ||||||||||||||||||    
T  11054548 tcatagggatttacataagaaattgcaaaaaatt 11054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 12792364 - 12792231
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  12792364 ttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattca 12792265  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttgg 317  Q
     |||  |||||| |||||||| ||||||| ||||    
T  12792264 gagaaatttacataagaaattacaaaaaaattgg 12792231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 47084056 - 47084149
Alignment:
Q  233 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||  |||||| ||||||||||||||||||| | ||||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaatttaggccggagcc 47084149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 191 - 312
Target Start/End: Complemental strand, 9742661 - 9742538
Alignment:
Q  191 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 288  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| ||      
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  289 gtttacacaagaaattgcaaaaaa 312  Q
     |||||| ||||||||| ||||||    
T  9742561 atttacataagaaattgtaaaaaa 9742538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 36851446 - 36851378
Alignment:
Q  258 ttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 36851378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 50328791 - 50328919
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||| |||  ||||||| ||||||||||  |||||||||||| | ||||||||||| ||||||||||| | ||||||||||||||| |    
T  50328791 ttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaa 50328890  T
Q  284 tagaggtttacacaagaaattgcaaaaaa 312  Q
     ||   |||||| ||||||||||||||||    
T  50328891 gaggaatttacaaaagaaattgcaaaaaa 50328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 35322837 - 35322704
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| |||||||||||  |||||||||| | ||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttgg 317  Q
     |||  |||| | || ||||| ||||||| ||||    
T  35322737 gagaaatttatataaaaaattacaaaaaaattgg 35322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 19124849 - 19124729
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 305  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||  ||||||| ||   ||||||||||||||||| ||   |||||| |||||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaattg 19124750  T
Q  306 caaaaaatttggcccggagcc 326  Q
    ||||||| || | ||||||||    
T  19124749 caaaaaaattaggccggagcc 19124729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  233 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 21853194 - 21853334
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcata 21853293  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  21853294 gggatttacacaagaaattgcaaaaaatttggcccggagcc 21853334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 141 - 326
Target Start/End: Original strand, 13856051 - 13856236
Alignment:
Q  141 aagtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 240  Q
    ||||||||||||||| |||||||||||||||  ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856051 aagtggcggagccaggaatattgtaaagcccaggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 13856150  T
Q  241 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  13856151 taaagaaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattgaaaaaaatttggcccggagcc 13856236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 44995144 - 44994959
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| ||||| |||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44995144 agtggcggagccaggaatatagtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 44995045  T
Q  242 aaagaaattgcccaatttat-agggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  44995044 aaagaaattgcccaatttataaggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 44994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 144 - 323
Target Start/End: Complemental strand, 40846090 - 40845911
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 243  Q
    |||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846090 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 40845991  T
Q  244 agaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccgga 323  Q
    |||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||    
T  40845990 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttgacccgga 40845911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 8950635 - 8950495
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8950635 ttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 8950536  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |   ||||||||||||||||||||||||||||||| |||||    
T  8950535 ggaatttacacaagaaattgcaaaaaatttggcccagagcc 8950495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 32352844 - 32352984
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  32352844 ttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcata 32352943  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||| |||||||||||||||||| |||||||||||||    
T  32352944 gggatttatacaagaaattgcaaaaaaattggcccggagcc 32352984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 5391411 - 5391594
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391411 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaat-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 5391509  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||  ||||| ||||| |||||||    
T  5391510 aaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgtcaaaaaattggcgcggagcc 5391594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 23467625 - 23467507
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23467625 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 23467526  T
Q  286 gaggtttacacaagaaatt 304  Q
    | | ||||||||| |||||    
T  23467525 gggatttacacaaaaaatt 23467507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 3178699 - 3178840
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  285 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    || | |||||||||||||||| ||||||||||| ||||||||    
T  3178799 agggatttacacaagaaattgaaaaaaatttgggccggagcc 3178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 186 - 327
Target Start/End: Original strand, 1781757 - 1781900
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcct 327  Q
     || | |||||| ||||||||||||||||||||| || ||||||    
T  1781857 gagggatttacataagaaattgcaaaaaatttgggccagagcct 1781900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 10839513 - 10839371
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  10839513 ttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattca 10839414  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
     |||  |||||| |||||||||||||||||||||  |||||||    
T  10839413 gagaaatttacataagaaattgcaaaaaatttgggtcggagcc 10839371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 43347468 - 43347327
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||     
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcag 43347369  T
Q  285 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||   |||||| |||||||||||||||||||||  |||||||    
T  43347368 aggaatttacataagaaattgcaaaaaatttgggtcggagcc 43347327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 20382514 - 20382655
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||| | |||||| ||||||||  ||||||||||| ||||||||    
T  20382614 tagggatttacataagaaatt-aaaaaaatttgggccggagcc 20382655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 19649506 - 19649363
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||| || ||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  283 atagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||| | |||||| |||||||| ||||||| |||  ||||||||    
T  19649406 atagcgatttacataagaaattacaaaaaagttgtgccggagcc 19649363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 36539627 - 36539769
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||| | |||||| ||||||||||| ||||||| | ||||||||    
T  36539727 tagggatttacataagaaattgcataaaatttaggccggagcc 36539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 190 - 312
Target Start/End: Original strand, 54546904 - 54547027
Alignment:
Q  190 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 288  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||      
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  289 gtttacacaagaaattgcaaaaaa 312  Q
     |||||  ||||||||||||||||    
T  54547004 atttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 195 - 317
Target Start/End: Complemental strand, 22845484 - 22845362
Alignment:
Q  195 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttac 294  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |      |||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttac 22845385  T
Q  295 acaagaaattgcaaaaaatttgg 317  Q
    | |||||||||||||||||||||    
T  22845384 ataagaaattgcaaaaaatttgg 22845362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 8926762 - 8926889
Alignment:
Q  187 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||| |||||||||     
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcag 8926861  T
Q  285 agaggtttacacaagaaattgcaaaaaa 312  Q
    ||   |||||| | ||||||||||||||    
T  8926862 aggaatttacatatgaaattgcaaaaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 33103739 - 33103866
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||  |||||||||||||| |||||||||||||| |     
T  33103739 ttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaatttaa 33103838  T
Q  285 agaggtttacacaagaaattgcaaaaaa 312  Q
     |   |||||| ||||||||||||||||    
T  33103839 gggaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 322
Target Start/End: Complemental strand, 46685891 - 46685779
Alignment:
Q  209 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaa 308  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||  ||||||||||||||| |  | | |||||| |||||| |||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa-tgcaa 46685793  T
Q  309 aaaatttggcccgg 322  Q
    ||||||||| ||||    
T  46685792 aaaatttgggccgg 46685779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 47889731 - 47889823
Alignment:
Q  196 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 286  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatag 47889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 6280491 - 6280352
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||     
T  6280491 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 6280392  T
Q  285 agaggtttacacaagaaattgcaaaaaatttggcccggag 324  Q
     ||  |||||| ||||||||||| ||||||| | ||||||    
T  6280391 ggaaatttacataagaaattgcacaaaatttaggccggag 6280352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 51336231 - 51336339
Alignment:
Q  211 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca-tagaggtttacacaagaaattgcaaa 309  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||||  ||||||||||| |||||||  |||  |||||| || ||||||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggaga-atttacataaaaaattgcaaa 51336329  T
Q  310 aaatttggcc 319  Q
    ||| ||||||    
T  51336330 aaaattggcc 51336339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 48206849 - 48206943
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaa 278  Q
    |||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| |||||| | ||||||||||| ||||||||||||    
T  48206849 ttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataagaa 48206943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 36826087 - 36825965
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| || ||||||| ||||||||||        |||| || ||||||| ||||||| |    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt--------tataagggtttatatgagaaattta 36825996  T
Q  284 tagaggtttacacaagaaattgcaaaaaatt 314  Q
     ||||||||||| ||||||||||||||||||    
T  36825995 aagaggtttacataagaaattgcaaaaaatt 36825965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 27642723 - 27642787
Alignment:
Q  252 cccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttg 316  Q
    ||||||||||| |||||||||||||||||||| |  | |||||| ||||||||||||||||||||    
T  27642723 cccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttg 27642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 317
Target Start/End: Complemental strand, 19644458 - 19644327
Alignment:
Q  190 aacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaa-ttgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||  | |||||||||||||||| ||||||||  ||||||| |||| ||| |||  |||||||||  ||||||||||| |||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcata 19644359  T
Q  286 gaggtttacacaagaaattgcaaaaaatttgg 317  Q
    |   |||||| || ||||| ||||||| ||||    
T  19644358 gcaatttacataaaaaattacaaaaaaattgg 19644327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 791812 - 791906
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    |||||||||||| ||||| |  ||||||||||||| |||   |||||| ||||||| |||||||||| | ||||||||||| ||||||||||||||||    
T  791812 ttgcaacacattaataggtgtttacataagaaattacaa---aataatcaaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 39352219 - 39352321
Alignment:
Q  214 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaat 313  Q
    ||||||||||||||||||||     | |||||||||||   ||||||||| ||||||||||||||||| | |||  |||| | ||||||||||||||| |    
T  39352219 gaaattgcaagcaaataatattttttttaaagaaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgcaaaaatt 39352317  T
Q  314 ttgg 317  Q
    ||||    
T  39352318 ttgg 39352321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 38397595 - 38397735
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38397595 ttgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 38397694  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  38397695 gggatttacacaagaaattgcaaaaaatttggcccggagcc 38397735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 142 - 323
Target Start/End: Original strand, 23218438 - 23218619
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23218438 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatgt 23218537  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccgga 323  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  23218538 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaactttggcccgga 23218619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 37169208 - 37169024
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||| ||||||| |||||||||||||||| ||          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37169208 agtggcagagccaggaatattgtaaagcccgggcaaaaaaaaatttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 37169109  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  37169108 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttggcccggagcc 37169024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 6257541 - 6257401
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  6257541 ttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcata 6257442  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  6257441 gggatttacacaagaaattgcaaaaaatttggcccggagcc 6257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 16618701 - 16618561
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||  |||||||||||||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||||||||||||||| ||||||||||||||||||||    
T  16618601 gggatttacacaagaaattgtaaaaaatttggcccggagcc 16618561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 39862618 - 39862479
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39862618 ttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcata 39862519  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagc 325  Q
    |   ||||||||||||||||||||||| ||||||||||||    
T  39862518 ggaatttacacaagaaattgcaaaaaaattggcccggagc 39862479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 189 - 326
Target Start/End: Original strand, 15631613 - 15631751
Alignment:
Q  189 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata-gggatttatataagaaattcataga 287  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||     
T  15631613 caacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagg 15631712  T
Q  288 ggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | |||| ||||||||||| ||||||||||||| ||||||    
T  15631713 gatttatacaagaaattgtaaaaaatttggcctggagcc 15631751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 8457096 - 8456954
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||| | |||||| ||||||||| ||||||||||| ||||||||    
T  8456996 tagggatttacataagaaattgaaaaaaatttgggccggagcc 8456954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 10081140 - 10081268
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||| |  |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  10081140 ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattca 10081239  T
Q  284 tagaggtttacacaagaaattgcaaaaaa 312  Q
    ||| | |||||| ||||||||| ||||||    
T  10081240 tagggatttacataagaaattgaaaaaaa 10081268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 36769206 - 36769067
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 284  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| ||||||||||||| |||| |||| | |||||||||||||||||     
T  36769206 ttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattcag 36769107  T
Q  285 agaggtttacacaagaaattgcaaaaaatttggcccggag 324  Q
    ||   |||||| ||||||||||||||||||||| ||||||    
T  36769106 aggaatttacataagaaattgcaaaaaatttgggccggag 36769067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 614522 - 614397
Alignment:
Q  189 caacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 286  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||| ||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  287 aggtttacacaagaaattgcaaaaaa 312  Q
       |||||| ||||||||||||||||    
T  614422 gaatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 11856290 - 11856432
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
     || | |||||| |||||||| || |||| |||| ||| ||||    
T  11856390 gagcgatttacataagaaattacagaaaacttgggccgaagcc 11856432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 9738094 - 9737981
Alignment:
Q  207 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata--gaggtttacacaagaaat 303  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||  |||||| |||||||    
T  9738094 tacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaat 9737995  T
Q  304 tgcaaaaaatttgg 317  Q
    || |||||| ||||    
T  9737994 tgaaaaaaaattgg 9737981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 25560460 - 25560330
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||   ||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  284 tagaggtttacacaagaaattgcaaaaaatt 314  Q
    ||  | |||||| ||||||||| ||||||||    
T  25560360 taaggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 186 - 314
Target Start/End: Original strand, 42119617 - 42119747
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||||||||| | ||||||||||| ||||||||||| | |||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T
Q  284 tagaggtttacacaagaaattgcaaaaaatt 314  Q
     ||   |||||| |||||||| |||||||||    
T  42119717 gaggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 27916134 - 27916266
Alignment:
Q  186 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    ||||||||||||||||||  ||  | |||||||||||||| |||||||||||||| | ||| |||||||| |||||||||||  ||||||||||||||||    
T  27916134 ttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattc 27916233  T
Q  283 atagaggtttacacaagaaattgcaaaaaattt 315  Q
    | ||   |||||| |||||||||||||||||||    
T  27916234 agaggaatttacataagaaattgcaaaaaattt 27916266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 29491521 - 29491414
Alignment:
Q  209 cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgca 307  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||| || ||||||||||||||||||  |||||| |||||||||||    
T  29491521 cataagaaattgcaagcaaataatcaaaaaatttaaagaa-ttgtccaatttataggggtt-atataagaaattcatagaaatttacataagaaattgca 29491424  T
Q  308 aaaaatttgg 317  Q
    ||| ||||||    
T  29491423 aaagatttgg 29491414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 33271377 - 33271263
Alignment:
Q  210 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaa 309  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||  |   |||||| ||||||||| |||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaaattgtaaa 33271278  T
Q  310 aaatttggcccggag 324  Q
    ||| |||| ||||||    
T  33271277 aaaattgggccggag 33271263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 6174762 - 6174874
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata--gggatttatataagaaattcatagaggtttacacaagaaatt 304  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||  ||| ||||||||||||||||| |    |||||  ||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaagaaatt 6174861  T
Q  305 gcaaaaaatttgg 317  Q
     ||||||||||||    
T  6174862 acaaaaaatttgg 6174874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 327
Target Start/End: Complemental strand, 3341230 - 3341110
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatat-aagaaattcatagaggtttacacaagaaattg 305  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| ||||||||||||||  |||||| || ||||||| |||  |||||| |||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattcagaga-atttacataagaaattg 3341132  T
Q  306 caaaaaatttggcccggagcct 327  Q
    |||||||||||| || ||||||    
T  3341131 caaaaaatttgggccagagcct 3341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 10115185 - 10115297
Alignment:
Q  215 aaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaat 313  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||||| ||| |||||||||||||| || ||   |||||| || |||||||||||||     
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaaaaa 10115284  T
Q  314 ttggcccggagcc 326  Q
    |||| ||||||||    
T  10115285 ttgggccggagcc 10115297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 29790328 - 29790219
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 306  Q
    |||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||  | |||||||||||||||||||    |||||| |||||||||     
T  29790328 tacataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattgt 29790230  T
Q  307 aaaaaatttgg 317  Q
    ||||| |||||    
T  29790229 aaaaattttgg 29790219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 326
Target Start/End: Complemental strand, 10052606 - 10052491
Alignment:
Q  212 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaa 310  Q
    |||||||||||||||||||||  |||| | |||||||||| || |||||||||   |||||||||| | |||| || | |||||| ||||||||| ||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaa 10052507  T
Q  311 aatttggcccggagcc 326  Q
    || |||| ||||||||    
T  10052506 aaattgggccggagcc 10052491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  233 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    ||||||| ||||| ||||||||||||||||||  |||||||||||||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 33188451 - 33188403
Alignment:
Q  208 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaa 256  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgcccaa 33188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 22903252 - 22903329
Alignment:
Q  186 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaata--ataaaaaatg-taaagaaattgcccaattt 259  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| |  ||||||||   |||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaaaagaataaaaaaaactaaagaaattgcccaattt 22903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 15475505 - 15475408
Alignment:
Q  207 tacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaat 303  Q
    ||||||||||||| | || |||||||| |||||| ||||||||||   |||||||||  ||||||||||| ||||| | |||  |||||| |||||||    
T  15475505 tacataagaaattacgagaaaataatacaaaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 49902465 - 49902605
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  49902465 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcata 49902564  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  49902565 gggatttacacaagaaattgcaaaaaatttggcccggagcc 49902605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 42517473 - 42517285
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517473 agtggcggagccaggaatattgtaaagcccgtgcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 42517374  T
Q  242 aaagaaattgcccaatttataggg----atttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||||||||||||||||||||||||     |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  42517373 aaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 42517285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 143 - 321
Target Start/End: Original strand, 3346740 - 3346918
Alignment:
Q  143 gtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 242  Q
    ||||||||||||| |||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346740 gtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 3346839  T
Q  243 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccg 321  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  3346840 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaacaaattgcaaaaaatttggcccg 3346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 48392537 - 48392397
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48392537 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcata 48392438  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    | | ||||||||||||||||||||||| ||||| |||||||    
T  48392437 gggatttacacaagaaattgcaaaaaaattggctcggagcc 48392397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 7742954 - 7742770
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||| ||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742954 agtggcggagccaggaatattgtaaagtccgagcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 7742855  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||| || || |||||||    
T  7742854 aaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattgcaaaaaaatttgctcggagcc 7742770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 189 - 326
Target Start/End: Original strand, 5974988 - 5975125
Alignment:
Q  189 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttaggg 5975087  T
Q  289 gtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
     |||||||||||||||| ||||||||||||||||||||    
T  5975088 atttacacaagaaattgaaaaaaatttggcccggagcc 5975125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 10156191 - 10156007
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    ||||||||||||||||||||||||||||| | ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10156191 agtggcggagccagaaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatat 10156092  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    |||||||||| |||||||||||   ||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  10156091 aaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcc 10156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 47022699 - 47022839
Alignment:
Q  186 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 285  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||    
T  47022699 ttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcata 47022798  T
Q  286 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  47022799 gagatttacacaagaaattgcaaaaaatttggcccggagcc 47022839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 142 - 304
Target Start/End: Original strand, 23908238 - 23908400
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  23908238 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaacat 23908337  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 304  Q
    |||||||||| ||||||||||||||||||||||||||||||||||   ||||||||| |||||    
T  23908338 aaagaaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 142 - 304
Target Start/End: Complemental strand, 29149723 - 29149561
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    |||||||||||||| |||||||||||| ||| ||          ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  29149723 agtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacgt 29149624  T
Q  242 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 304  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||    
T  29149623 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 29149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 189 - 326
Target Start/End: Original strand, 38859849 - 38859988
Alignment:
Q  189 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 286  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  287 aggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
       |||||| ||||||||| ||||||||||| ||||||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcc 38859988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 10907781 - 10907639
Alignment:
Q  186 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| |  |||||||||| |||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
     ||   |||||| ||||||||||||||||||||| ||||||||    
T  10907681 gaggaatttacataagaaattgcaaaaaatttgggccggagcc 10907639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 207 - 327
Target Start/End: Original strand, 30745361 - 30745482
Alignment:
Q  207 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 305  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||  |||||| || ||||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30745460  T
Q  306 caaaaaatttggcccggagcct 327  Q
    ||||| ||||||  ||||||||    
T  30745461 caaaatatttgggtcggagcct 30745482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 207 - 327
Target Start/End: Original strand, 30766812 - 30766933
Alignment:
Q  207 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 305  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||  |||||| || ||||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30766911  T
Q  306 caaaaaatttggcccggagcct 327  Q
    ||||| ||||||  ||||||||    
T  30766912 caaaatatttgggtcggagcct 30766933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 214 - 312
Target Start/End: Original strand, 5558334 - 5558431
Alignment:
Q  214 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 312  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||  | ||||||||| ||||||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcgga-aggtttacataagaaattgcaaaaaa 5558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 42456566 - 42456700
Alignment:
Q  186 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttatagggatttatataagaaattc 282  Q
    |||||||||||||||||||  |  ||||||||||||||||| | ||||||||   | | |||||||||||||||||||||||| ||||||||||||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattc 42456665  T
Q  283 atagaggtttacacaagaaattgcaaaaaatttgg 317  Q
    ||||   |||||| ||||||| |||||||||||||    
T  42456666 ataggaatttacataagaaatagcaaaaaatttgg 42456700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 26835333 - 26835461
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| ||||||  |||||||||||  |||||||||||||||||    
T  26835333 ttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattca 26835432  T
Q  284 tagaggtttacacaagaaattgcaaaaaa 312  Q
    ||    |||||| || |||||||||||||    
T  26835433 tatgaatttacataataaattgcaaaaaa 26835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 37189697 - 37189774
Alignment:
Q  246 aaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggag 324  Q
    |||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc-aaaaatttgggccggag 37189774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 26511739 - 26511625
Alignment:
Q  211 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaa 310  Q
    |||||||||| ||| ||||||| |||||| ||||||||||   ||||||| ||| ||||||||||||||||||  | |||||||| ||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca-gggggtttacataagaaattgcaaaa 26511641  T
Q  311 aatttggcccggagcc 326  Q
    || || | ||||||||    
T  26511640 aaattaggccggagcc 26511625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 30252856 - 30252787
Alignment:
Q  207 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataa 275  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| | |||||||||||||||||||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataa 30252787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 13131914 - 13132017
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 306  Q
    |||||||||||||||||| | ||||  |||||  ||||||||||| ||||||||||| ||||||||||| ||||| | ||   |||||| |||||||| |    
T  13131914 tacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaaattac 13132013  T
Q  307 aaaa 310  Q
    ||||    
T  13132014 aaaa 13132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 311
Target Start/End: Original strand, 14796871 - 14796998
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T
Q  284 tagaggtttacacaagaaattgcaaaaa 311  Q
     ||   |||||| || ||||||||||||    
T  14796971 gaggaatttacataaaaaattgcaaaaa 14796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 311
Target Start/End: Original strand, 14805745 - 14805872
Alignment:
Q  186 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T
Q  284 tagaggtttacacaagaaattgcaaaaa 311  Q
     ||   |||||| || ||||||||||||    
T  14805845 gaggaatttacataaaaaattgcaaaaa 14805872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 44107521 - 44107382
Alignment:
Q  186 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||    ||||||||||| ||||||||| ||| |||    
T  44107521 ttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatca 44107422  T
Q  284 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 326  Q
     ||   |||||| |||||   |||||||| |||| ||||||||    
T  44107421 gaggaatttacataagaa---gcaaaaaaattggaccggagcc 44107382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 45968685 - 45968761
Alignment:
Q  207 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 283  Q
    |||||||||||||||||| ||||||| |||||| || | |||||| |||||||||| |   |||||||| |||||||    
T  45968685 tacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattca 45968761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  208 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 250  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 54542 - 54653
Alignment:
Q  212 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||||| ||||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 54641  T
Q  312 atttggcccgga 323  Q
    | ||||||||||    
T  54642 aattggcccgga 54653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 54441 - 54551
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 241  Q
    ||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54441 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 54540  T
Q  242 aaagaaattgc 252  Q
    |||||||||||    
T  54541 aaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 34563 - 34457
Alignment:
Q  207 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 305  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||  |||||| || | |||||| |||||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaattg 34464  T
Q  306 caaaaaa 312  Q
    |||||||    
T  34463 caaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 20915 - 20836
Alignment:
Q  233 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 312  Q
    ||||||| |||| |||||| ||||||||||| | ||||||||||||||||| ||   |||||| ||||||||||||||||    
T  20915 aaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaa 20836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 85547 - 85592
Alignment:
Q  236 aaatgtaaagaaattgcccaatttatagggatttatataagaaatt 281  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

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