View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_low_1 (Length: 849)

Name: NF1386_low_1
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_low_1
NF1386_low_1
[»] chr7 (4 HSPs)
chr7 (96-844)||(36126850-36127595)
chr7 (372-474)||(27571822-27571922)
chr7 (483-529)||(15050181-15050226)
chr7 (371-424)||(30182320-30182373)
[»] chr4 (4 HSPs)
chr4 (381-478)||(18596995-18597091)
chr4 (371-419)||(2206367-2206415)
chr4 (380-474)||(8330075-8330168)
chr4 (371-459)||(32818394-32818480)
[»] chr2 (1 HSPs)
chr2 (371-464)||(3476453-3476545)
[»] chr6 (3 HSPs)
chr6 (371-459)||(2234490-2234576)
chr6 (371-425)||(30926802-30926856)
chr6 (371-425)||(31305871-31305925)
[»] chr1 (2 HSPs)
chr1 (371-424)||(3515826-3515879)
chr1 (483-524)||(8130851-8130892)
[»] chr3 (2 HSPs)
chr3 (371-474)||(35058321-35058422)
chr3 (371-425)||(51285577-51285631)
[»] scaffold0361 (1 HSPs)
scaffold0361 (487-526)||(14268-14307)
[»] chr8 (2 HSPs)
chr8 (380-478)||(32056320-32056416)
chr8 (485-530)||(30251625-30251670)
[»] chr5 (2 HSPs)
chr5 (483-524)||(15368136-15368177)
chr5 (429-474)||(29922586-29922631)


Alignment Details
Target: chr7 (Bit Score: 636; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 96 - 844
Target Start/End: Complemental strand, 36127595 - 36126850
Alignment:
Q  96 actaccgcctccgtgttgccggtaagcgcttccaaaaggattggaccgtgtcggaggtcgtcgactccgtcctctccctcactctccgtgacgacattga 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127595 actaccgcctccgtgttgccggtaaccgcttccaaaaggattggaccgtgtcggaggtcgtcgactccgtcctctccctcactctccgtgacgacattga 36127496  T
Q  196 aggcctgctcaatcgttggattggtcgattcgctcgcaagaatttccctttcctcatcagagtatcgcacttttcctttctcttcactcttccatgacta 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36127495 aggcctgctcaatcgttggattggtcgattcgctcgcaagaatttccctttcctcatcagagtatcgcactttacctttctcttcactcttccatgacta 36127396  T
Q  296 caactacaaccttagtgcttgtttgattctgctttgacaaaaattgacagttgaaaataaagtgatttatggtagtttgagtgcaaaaatcaattctaga 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36127395 caactacaaccttagtgcttgtttgattctgctttgacaaaaattgacagttgaaaataaagtgatttatggtagtttgagtgctaaaatcaattctaga 36127296  T
Q  396 atgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgtttccagaatcaattttg 495  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127295 atgaaaatcttcaatttttagcttaaagttaggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgtttccagaatcaattttg 36127196  T
Q  496 gctcttcctgaagtggaaccaaacatacacttagaagcttctgactcaattttagcttaaacaataca--------------attgtattttcatatttg 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||    
T  36127195 gctcttcctgaagtggaaccaaacatacacttagaagcttctgactcaattttagcttaaacaatacaattaatcattgtgcattgtattttcatatttg 36127096  T
Q  582 ataggagttgacacaacgaggttcaattgaacactgtaacttagttttcagctggatgaagaatcagaaaaattattgtgccagaacagatatgtacaac 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36127095 ataggagttgacacaacgaggttcaattgaacactgtaacttagttttcagctggatgaagaatcagaaaaattattgtgccagaacagatatatacaac 36126996  T
Q  682 atgatgattaggttgcatgctaggcataatagaacggatcaggcacgtggtttgttttttgagatgcaaaaatgcaggtatggtatgactggtgaaggtt 781  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  36126995 atgatgattaggttgcatgctaggcataatagaacggatcaggcacgtggtttgttttttgagatgcaaaaatgcaggtatggtatgactggt------- 36126903  T
Q  782 ttagttttgcgaaggtttagttatttaatcgttgttagtaattgtgtgtgtgtctgtggtgct 844  Q
              |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36126902 ----------gaaggtttagttatttaatcgttgttagtaattgtgtgtgtgtctgtgttgct 36126850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 372 - 474
Target Start/End: Complemental strand, 27571922 - 27571822
Alignment:
Q  372 ttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatca 471  Q
    |||||||  ||||||||||||||||| |||| || |||||| || ||| |||| |  ||||||||||||| | |||||||||| |||| |||| ||||||    
T  27571922 ttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtag--aatcaattcttgaggtaaaatcaattatactcgagagcaatca 27571825  T
Q  472 aac 474  Q
    |||    
T  27571824 aac 27571822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 483 - 529
Target Start/End: Complemental strand, 15050226 - 15050181
Alignment:
Q  483 agaatcaattttggctcttcctgaagtggaaccaaacatacacttag 529  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||    
T  15050226 agaatcaattttggctcctcca-aagtggaaccaaacatacacttag 15050181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 30182320 - 30182373
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagt 424  Q
    |||||||| |||||| ||||||||||| |||| || ||||||||||||| ||||    
T  30182320 tttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagt 30182373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 381 - 478
Target Start/End: Complemental strand, 18597091 - 18596995
Alignment:
Q  381 aaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgt 478  Q
    |||||||||| |||||| ||||  ||||| || |||||| ||||| | |||||||||| || | ||||||||||||||||||||  ||||||||||||    
T  18597091 aaaatcaattatagaatcaaaaggttcaaattatagcttcaagttag-aatcaattctggaggtaaaatcaattttacttgagagaaatcaaacttgt 18596995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 2206367 - 2206415
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagctt 419  Q
    ||||||||||||||||||| ||||||| |||| || |||||||||||||    
T  2206367 tttgagtgcaaaaatcaatcctagaatcaaaagctccaatttttagctt 2206415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 474
Target Start/End: Complemental strand, 8330168 - 8330075
Alignment:
Q  380 aaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaac 474  Q
    ||||||||||| |||||| |||| || |||||| |||||| |||||  ||||| ||| | || ||| |||||||||||||||||| ||| |||||    
T  8330168 aaaaatcaattatagaatcaaaagctccaatttctagcttcaagtt-agaatccattatggaggcagaatcaattttacttgagagcaaccaaac 8330075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 459
Target Start/End: Original strand, 32818394 - 32818480
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttact 459  Q
    |||| |||||||||||||||||||||| |||| || ||| || |||||| || |   ||||||||||| || |||||||||||| ||||    
T  32818394 tttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaat--agaatcaattctggaggcaaaatcaattctact 32818480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 371 - 464
Target Start/End: Original strand, 3476453 - 3476545
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgaga 464  Q
    ||||| || |||||| ||||||||||| |||| ||  |||||||||||| ||||| | |||||||||| || ||||||||||||||||| ||||    
T  3476453 tttgaatgtaaaaataaattctagaatcaaaagctctaatttttagctttaagttag-aatcaattctggaggcaaaatcaattttactcgaga 3476545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 459
Target Start/End: Complemental strand, 2234576 - 2234490
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttact 459  Q
    ||||||||  ||||||||||||||||| |||| ||||| |||||||||| |||||  ||||||||| |  | |||||||||||| ||||    
T  2234576 tttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagtt--gaatcaattttgaaggcaaaatcaattctact 2234490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 30926802 - 30926856
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 425  Q
    |||||||| |||||||||||||||||| |||| || |||||| |||||| |||||    
T  30926802 tttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttcaagtt 30926856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 31305871 - 31305925
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 425  Q
    |||||||| | |||||||||||||||| |||| || ||||||||||||| |||||    
T  31305871 tttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagtt 31305925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 3515879 - 3515826
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagt 424  Q
    |||||||| ||||||||||||||||||||||| || |||||| |||||| ||||    
T  3515879 tttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagt 3515826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 8130892 - 8130851
Alignment:
Q  483 agaatcaattttggctcttcctgaagtggaaccaaacataca 524  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  8130892 agaatcaattttggctcctccagaagtggaaccaaacataca 8130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 35058422 - 35058321
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatc 470  Q
    ||||||||  ||||||||||||||||| |||| ||  ||||| |||||  |||| |  ||||||||||||| |||||||||||| |||| |||| | |||    
T  35058422 tttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtag--aatcaattcttgaggcaaaatcaattctactcgagagccatc 35058325  T
Q  471 aaac 474  Q
    ||||    
T  35058324 aaac 35058321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 51285631 - 51285577
Alignment:
Q  371 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 425  Q
    ||||||||||||||||||||||||||| |||| ||   ||||||||||| |||||    
T  51285631 tttgagtgcaaaaatcaattctagaatcaaaagctgtgatttttagcttcaagtt 51285577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 526
Target Start/End: Original strand, 14268 - 14307
Alignment:
Q  487 tcaattttggctcttcctgaagtggaaccaaacatacact 526  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  14268 tcaattttggctcttccaaaagtggaaccaaacatacact 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 478
Target Start/End: Complemental strand, 32056416 - 32056320
Alignment:
Q  380 aaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgt 478  Q
    |||||||||||||||||| | || || |||||| |||||||||||| | |||||||| | || | |||||||||||||||  ||| ||| |||||||||    
T  32056416 aaaaatcaattctagaat-agaagctccaatttctagcttaaagttag-aatcaattatggaggtaaaatcaattttactatagagcaaccaaacttgt 32056320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 530
Target Start/End: Complemental strand, 30251670 - 30251625
Alignment:
Q  485 aatcaattttggctcttcctgaagtggaaccaaacatacacttaga 530  Q
    ||||||||||||||| |||  | |||||||||||||||||||||||    
T  30251670 aatcaattttggctcctccaaatgtggaaccaaacatacacttaga 30251625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 15368177 - 15368136
Alignment:
Q  483 agaatcaattttggctcttcctgaagtggaaccaaacataca 524  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  15368177 agaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 29922631 - 29922586
Alignment:
Q  429 aatcaattcttgatgcaaaatcaattttacttgagaccaatcaaac 474  Q
    ||||||||||||| |||||||||||| |||| |||| |||||||||    
T  29922631 aatcaattcttgaggcaaaatcaattctactagagaacaatcaaac 29922586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University