View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_low_11 (Length: 503)

Name: NF1386_low_11
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_low_11
NF1386_low_11
[»] chr8 (19 HSPs)
chr8 (185-325)||(35806791-35806931)
chr8 (142-325)||(22324549-22324733)
chr8 (185-325)||(21525355-21525495)
chr8 (188-320)||(42013872-42014004)
chr8 (185-325)||(26021392-26021533)
chr8 (185-325)||(33934360-33934500)
chr8 (185-325)||(42072425-42072565)
chr8 (206-326)||(24065291-24065411)
chr8 (185-322)||(19334779-19334917)
chr8 (240-325)||(16523158-16523243)
chr8 (188-316)||(16818973-16819105)
chr8 (242-314)||(16591377-16591449)
chr8 (206-315)||(43282852-43282962)
chr8 (436-484)||(42358186-42358234)
chr8 (206-303)||(21488084-21488181)
chr8 (206-274)||(34697431-34697500)
chr8 (185-311)||(10112042-10112170)
chr8 (185-311)||(2271197-2271318)
chr8 (139-172)||(16523018-16523051)
[»] chr7 (17 HSPs)
chr7 (185-325)||(34707113-34707253)
chr7 (185-325)||(44164734-44164874)
chr7 (185-325)||(10576670-10576810)
chr7 (142-325)||(24320430-24320613)
chr7 (141-323)||(32876523-32876706)
chr7 (196-325)||(34259526-34259655)
chr7 (185-323)||(29555932-29556070)
chr7 (185-325)||(29238134-29238274)
chr7 (203-325)||(29981104-29981226)
chr7 (142-316)||(19334560-19334736)
chr7 (185-325)||(33057648-33057789)
chr7 (185-325)||(17303105-17303248)
chr7 (185-325)||(10334173-10334315)
chr7 (211-311)||(9770682-9770782)
chr7 (185-311)||(26284383-26284510)
chr7 (232-311)||(15017817-15017896)
chr7 (185-280)||(41853128-41853226)
[»] chr3 (29 HSPs)
chr3 (185-325)||(21853194-21853334)
chr3 (185-325)||(13856096-13856236)
chr3 (185-325)||(44994959-44995100)
chr3 (185-322)||(40845911-40846048)
chr3 (142-325)||(5391411-5391594)
chr3 (185-325)||(8950495-8950635)
chr3 (185-325)||(32352844-32352984)
chr3 (185-303)||(23467507-23467625)
chr3 (185-325)||(3178699-3178840)
chr3 (185-326)||(1781757-1781900)
chr3 (185-325)||(10839371-10839513)
chr3 (185-325)||(43347327-43347468)
chr3 (185-325)||(20382514-20382655)
chr3 (185-325)||(19649363-19649506)
chr3 (185-325)||(36539627-36539769)
chr3 (189-311)||(54546904-54547027)
chr3 (194-316)||(22845362-22845484)
chr3 (186-311)||(8926762-8926889)
chr3 (185-311)||(33103739-33103866)
chr3 (208-321)||(46685779-46685891)
chr3 (195-285)||(47889731-47889823)
chr3 (185-323)||(6280352-6280491)
chr3 (210-318)||(51336231-51336339)
chr3 (185-277)||(48206849-48206943)
chr3 (185-313)||(36825965-36826087)
chr3 (251-315)||(27642723-27642787)
chr3 (189-316)||(19644327-19644458)
chr3 (185-280)||(791812-791906)
chr3 (213-316)||(39352219-39352321)
[»] chr6 (16 HSPs)
chr6 (185-320)||(14309794-14309929)
chr6 (142-325)||(9231845-9232029)
chr6 (142-325)||(24694642-24694826)
chr6 (142-325)||(13627494-13627677)
chr6 (214-326)||(1727923-1728035)
chr6 (185-325)||(28750641-28750783)
chr6 (185-316)||(27863695-27863828)
chr6 (190-315)||(13103119-13103246)
chr6 (206-311)||(34103703-34103808)
chr6 (206-282)||(11212689-11212765)
chr6 (185-282)||(11279536-11279634)
chr6 (244-326)||(24497564-24497646)
chr6 (185-237)||(11084607-11084659)
chr6 (262-322)||(11084664-11084724)
chr6 (240-280)||(8412717-8412757)
chr6 (188-249)||(24500767-24500830)
[»] chr2 (23 HSPs)
chr2 (142-325)||(14942035-14942219)
chr2 (144-325)||(29846396-29846579)
chr2 (185-325)||(42769749-42769889)
chr2 (185-325)||(40277279-40277419)
chr2 (185-324)||(14186430-14186569)
chr2 (15-140)||(24145323-24145448)
chr2 (185-319)||(19181545-19181679)
chr2 (185-327)||(6318446-6318592)
chr2 (144-280)||(3597903-3598039)
chr2 (185-285)||(1387319-1387420)
chr2 (185-316)||(14539704-14539837)
chr2 (185-314)||(33009667-33009799)
chr2 (142-325)||(3956524-3956709)
chr2 (185-306)||(41674716-41674840)
chr2 (209-323)||(43139766-43139882)
chr2 (185-311)||(40780050-40780179)
chr2 (185-316)||(28321703-28321836)
chr2 (185-280)||(23685406-23685503)
chr2 (206-311)||(2888058-2888164)
chr2 (289-325)||(3597881-3597917)
chr2 (185-264)||(32486239-32486320)
chr2 (209-280)||(25665244-25665316)
chr2 (367-398)||(24145301-24145332)
[»] chr5 (27 HSPs)
chr5 (185-325)||(38397595-38397735)
chr5 (185-325)||(6257401-6257541)
chr5 (185-325)||(37169024-37169164)
chr5 (142-322)||(23218438-23218619)
chr5 (185-325)||(16618561-16618701)
chr5 (185-324)||(39862479-39862618)
chr5 (188-325)||(15631613-15631751)
chr5 (185-325)||(8456954-8457096)
chr5 (142-311)||(10081097-10081268)
chr5 (185-323)||(36769067-36769206)
chr5 (188-311)||(614397-614522)
chr5 (185-325)||(11856290-11856432)
chr5 (206-316)||(9737981-9738094)
chr5 (185-313)||(25560330-25560460)
chr5 (185-313)||(42119617-42119747)
chr5 (185-314)||(27916134-27916266)
chr5 (208-316)||(29491414-29491521)
chr5 (209-323)||(33271263-33271377)
chr5 (206-316)||(6174762-6174874)
chr5 (206-326)||(3341110-3341230)
chr5 (214-325)||(10115185-10115297)
chr5 (206-316)||(29790219-29790328)
chr5 (211-325)||(10052491-10052606)
chr5 (232-280)||(19322058-19322106)
chr5 (207-255)||(33188403-33188451)
chr5 (185-258)||(22903252-22903329)
chr5 (206-302)||(15475408-15475505)
[»] chr4 (27 HSPs)
chr4 (185-325)||(1535768-1535908)
chr4 (185-325)||(49284354-49284494)
chr4 (142-325)||(25954703-25954887)
chr4 (188-325)||(34240993-34241130)
chr4 (142-325)||(37801255-37801439)
chr4 (142-303)||(52632471-52632633)
chr4 (185-325)||(36012176-36012316)
chr4 (185-325)||(35018933-35019072)
chr4 (188-303)||(46583554-46583669)
chr4 (211-322)||(16338207-16338318)
chr4 (185-325)||(17888541-17888683)
chr4 (142-325)||(31377342-31377526)
chr4 (142-251)||(16338309-16338419)
chr4 (206-316)||(20818584-20818695)
chr4 (185-315)||(54090176-54090307)
chr4 (185-324)||(46473989-46474130)
chr4 (215-322)||(10094387-10094495)
chr4 (185-313)||(11054448-11054581)
chr4 (185-281)||(322584-322682)
chr4 (185-316)||(12792231-12792364)
chr4 (232-325)||(47084056-47084149)
chr4 (190-311)||(9742538-9742661)
chr4 (257-325)||(36851378-36851446)
chr4 (185-311)||(50328791-50328919)
chr4 (185-316)||(35322704-35322837)
chr4 (206-325)||(19124729-19124849)
chr4 (232-280)||(5780790-5780838)
[»] chr1 (26 HSPs)
chr1 (185-325)||(49902465-49902605)
chr1 (185-325)||(48392397-48392537)
chr1 (142-325)||(42517285-42517473)
chr1 (185-320)||(3346783-3346918)
chr1 (188-325)||(5974988-5975125)
chr1 (142-325)||(7742770-7742954)
chr1 (185-325)||(47022699-47022839)
chr1 (142-325)||(10156007-10156191)
chr1 (185-303)||(29149561-29149679)
chr1 (142-303)||(23908238-23908400)
chr1 (188-325)||(38859849-38859988)
chr1 (185-325)||(10907639-10907781)
chr1 (206-326)||(30745361-30745482)
chr1 (206-326)||(30766812-30766933)
chr1 (213-311)||(5558334-5558431)
chr1 (185-316)||(42456566-42456700)
chr1 (185-311)||(26835333-26835461)
chr1 (245-323)||(37189697-37189774)
chr1 (210-325)||(26511625-26511739)
chr1 (206-274)||(30252787-30252856)
chr1 (206-309)||(13131914-13132017)
chr1 (185-310)||(14796871-14796998)
chr1 (185-310)||(14805745-14805872)
chr1 (185-325)||(44107382-44107521)
chr1 (206-282)||(45968685-45968761)
chr1 (207-249)||(8430508-8430551)
[»] scaffold0079 (2 HSPs)
scaffold0079 (211-322)||(54542-54653)
scaffold0079 (142-251)||(54441-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (206-311)||(34457-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (232-311)||(20836-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (235-280)||(85547-85592)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 35806791 - 35806931
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35806791 ttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 35806890  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  35806891 gagatttacacaagaaattgcaaaaaatttggcccggagcc 35806931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 22324549 - 22324733
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnn-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324549 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 22324648  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  22324649 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagcc 22324733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 21525355 - 21525495
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  21525355 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 21525454  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | ||||||||||||||||||||||||||| |||||||||    
T  21525455 gggatttacacaagaaattgcaaaaaatttgacccggagcc 21525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 188 - 320
Target Start/End: Original strand, 42013872 - 42014004
Alignment:
Q  188 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |    
T  42013872 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatataagaaattcataggg 42013971  T
Q  288 gtttacacaagaaattgcaaaaaatttggcccg 320  Q
     ||||||||||||||||||||||||||||||||    
T  42013972 atttacacaagaaattgcaaaaaatttggcccg 42014004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 26021392 - 26021533
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  26021392 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcat 26021491  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    || | |||||| |||||||||||||||||||||| |||||||    
T  26021492 agggatttacaaaagaaattgcaaaaaatttggcacggagcc 26021533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 33934500 - 33934360
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  33934500 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcata 33934401  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |   |||||| ||||||||||||||||||||||| ||||||    
T  33934400 ggaatttacaaaagaaattgcaaaaaatttggcctggagcc 33934360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 42072425 - 42072565
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42072425 ttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 42072524  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | ||||||||||||||||||||||| |||||||||||||    
T  42072525 gggatttacacaagaaattgcaaaaaaattggcccggagcc 42072565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 24065291 - 24065411
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 305  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||| |||| |  |||||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaattgc 24065390  T
Q  306 aaaaaatttggcccggagcct 326  Q
    ||||  |||||||| ||||||    
T  24065391 aaaagttttggcccagagcct 24065411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 185 - 322
Target Start/End: Original strand, 19334779 - 19334917
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| | ||||||||| | ||||||||| ||||||||    
T  19334779 ttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcat 19334878  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccgga 322  Q
    |    |||| | ||||||||||||||||||||| |||||    
T  19334879 aagaatttatataagaaattgcaaaaaatttgggccgga 19334917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 16523158 - 16523243
Alignment:
Q  240 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | |||||| | ||||||| ||||||||||| ||||||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcc 16523243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 16819105 - 16818973
Alignment:
Q  188 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatg---taaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    ||||||||||||||||  | | |||| |||||||||||||||||||||| |     || ||||||| |||||||||||||| |||||||||||||||||     
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaa 16819006  T
Q  284 agaggtttacacaagaaattgcaaaaaatttgg 316  Q
     ||| |||||| |||||||||||||||||||||    
T  16819005 ggagatttacaaaagaaattgcaaaaaatttgg 16818973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 16591449 - 16591377
Alignment:
Q  242 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaattt 314  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  |||||| |||||||||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaattt 16591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 43282962 - 43282852
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatg-taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 304  Q
    |||||||||||| |||||||||||||||||| |  ||| |||||| |||||||||||||||||||||||| ||||||| |    |||||| |||||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacataagaaattg 43282863  T
Q  305 caaaaaatttg 315  Q
     ||||||||||    
T  43282862 taaaaaatttg 43282852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 42358234 - 42358186
Alignment:
Q  436 aggtggttggttatcttttacatacactgtcagtatgctatgcttagat 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42358234 aggtggttggttatcttttacatacactgtcagtatgctatgcttagat 42358186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 21488084 - 21488181
Alignment:
Q  206 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 303  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||| ||| ||| ||||||||||||| ||   |||||||||||||||    
T  21488084 tacataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaatt 21488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 34697500 - 34697431
Alignment:
Q  206 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgcccaatttatagggatttatataa 274  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| | |||||||||| |||||||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 10112042 - 10112170
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||| ||||||||||  | ||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||| |  ||||||||||||||| |    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaa 10112141  T
Q  283 tagaggtttacacaagaaattgcaaaaaa 311  Q
     ||   |||||| || |||||||||||||    
T  10112142 gaggaatttacataaaaaattgcaaaaaa 10112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 2271197 - 2271318
Alignment:
Q  185 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    ||||||||||||||||||| ||  ||||||||||||| |||       |||||||| |||||||||| || ||| ||||||| |||||||||||||||||    
T  2271197 ttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattca 2271289  T
Q  283 tagaggtttacacaagaaattgcaaaaaa 311  Q
        | |||||| ||||||||||||||||    
T  2271290 gcatgatttacataagaaattgcaaaaaa 2271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 16523018 - 16523051
Alignment:
Q  139 ataagtggcggagccagaaatattgtaaagcccg 172  Q
    ||||||||||||||||||| ||||||||||||||    
T  16523018 ataagtggcggagccagaattattgtaaagcccg 16523051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 34707113 - 34707253
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34707113 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 34707212  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  34707213 gggatttacacaagaaattgcaaaaaatttggcccggagcc 34707253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 44164874 - 44164734
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44164874 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 44164775  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||  |||||||||||||||||||||||||||||||||||||    
T  44164774 gaaatttacacaagaaattgcaaaaaatttggcccggagcc 44164734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 10576670 - 10576810
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10576670 ttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 10576769  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  10576770 gggatttacacaagaaattgcaaaaaatttggcccggagcc 10576810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 24320613 - 24320430
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 241  Q
    |||||||||| ||| |||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320613 agtggcggagtcaggaatattgtaaagcccgggcaaaaaaattttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 24320514  T
Q  242 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||||||||||||||||||||| |||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||    
T  24320513 aagaaattgcccaatttataggggtttatataagaaattcgtaggaatttacacaagaaattgcaaaaaatttggcccggagcc 24320430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 141 - 323
Target Start/End: Complemental strand, 32876706 - 32876523
Alignment:
Q  141 aagtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 239  Q
    ||||||||||||||| |||||||||||||||| ||         || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32876706 aagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatg 32876607  T
Q  240 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggag 323  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  32876606 taaagaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccggag 32876523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 196 - 325
Target Start/End: Original strand, 34259526 - 34259655
Alignment:
Q  196 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 34259625  T
Q  296 aagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||| |||||||||||||    
T  34259626 aagaaattgcaaaaaaattggcccggagcc 34259655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 323
Target Start/End: Complemental strand, 29556070 - 29555932
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29556070 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 29555971  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggag 323  Q
    |   ||||||||||||||||  ||||| |||||||||||    
T  29555970 ggaatttacacaagaaattgtcaaaaaattggcccggag 29555932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 29238274 - 29238134
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||    
T  29238274 ttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcata 29238175  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | ||||||||||||||||||||||| |||||||||||||    
T  29238174 gggatttacacaagaaattgcaaaaaaattggcccggagcc 29238134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 29981226 - 29981104
Alignment:
Q  203 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaat 302  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||   |||||||||||||||||||| | ||||||||||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaat 29981127  T
Q  303 tgcaaaaaatttggcccggagcc 325  Q
    ||||||| | |||||||||||||    
T  29981126 tgcaaaagaattggcccggagcc 29981104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 142 - 316
Target Start/End: Complemental strand, 19334736 - 19334560
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa--tg 239  Q
    |||||||||||||| | |||||||||||||| ||         |||||||| ||||||||||  || |||||||||||||||||||||||||||||  |     
T  19334736 agtggcggagccaggactattgtaaagcccgggcaaaaaaatattgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaatc 19334637  T
Q  240 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttgg 316  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||   |||||| |||||||||||||||| ||||    
T  19334636 taaagaaattgtccaatttataggggtttatataagaaattcataggtatttacataagaaattgcaaaaaaattgg 19334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 33057789 - 33057648
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||  ||||||||||||  |||||||||||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    || | |||||| ||||||||| |||||| |||| ||||||||    
T  33057689 agggatttacataagaaattgaaaaaaaattgggccggagcc 33057648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 17303248 - 17303105
Alignment:
Q  185 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| | || ||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  282 atagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||   |||||| |||||||||||||||| ||||  |||||||    
T  17303148 ataggaatttacataagaaattgcaaaaaaattgggtcggagcc 17303105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 10334173 - 10334315
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |  |||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     ||   |||||| |||||||||||||||| |||| || |||||    
T  10334273 gaggaatttacataagaaattgcaaaaaaattgggccagagcc 10334315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 9770682 - 9770782
Alignment:
Q  211 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 310  Q
    ||||||||||||||||||||| |||| | ||||||||||| |||||| |||| | |||||||||||||||||    | |||||| |||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaa 9770781  T
Q  311 a 311  Q
    |    
T  9770782 a 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 311
Target Start/End: Complemental strand, 26284510 - 26284383
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||   | || |||||||||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttata-ctagttttataagaaattcag 26284412  T
Q  284 agag-gtttacacaagaaattgcaaaaaa 311  Q
    || |  |||||| ||||||||||||||||    
T  26284411 agggattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 15017817 - 15017896
Alignment:
Q  232 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 311  Q
    ||||||| ||||||||||| |||||||||| |  ||||||||||||||||| ||   |||||| ||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 41853128 - 41853226
Alignment:
Q  185 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    ||||||||||||||||| ||  || |||  ||||||||||||||||||  ||||||| |||| |||||| |||| ||||||| ||||| ||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 21853194 - 21853334
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcata 21853293  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  21853294 gggatttacacaagaaattgcaaaaaatttggcccggagcc 21853334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 13856096 - 13856236
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13856096 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcata 13856195  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||| ||||||||||||||||||||    
T  13856196 gggatttacacaagaaattgaaaaaaatttggcccggagcc 13856236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 44995100 - 44994959
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttat-agggatttatataagaaattcat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  44995100 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattcat 44995001  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    || | |||||||||||||||||||||||||||||||||||||    
T  44995000 agggatttacacaagaaattgcaaaaaatttggcccggagcc 44994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 185 - 322
Target Start/End: Complemental strand, 40846048 - 40845911
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40846048 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 40845949  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccgga 322  Q
    | | ||||||||| ||||||||||||||||| ||||||    
T  40845948 gggatttacacaaaaaattgcaaaaaatttgacccgga 40845911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 5391411 - 5391594
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 241  Q
    |||||||||||||| |||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391411 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 5391510  T
Q  242 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||  ||||| ||||| |||||||    
T  5391511 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgtcaaaaaattggcgcggagcc 5391594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 8950635 - 8950495
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8950635 ttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 8950536  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |   ||||||||||||||||||||||||||||||| |||||    
T  8950535 ggaatttacacaagaaattgcaaaaaatttggcccagagcc 8950495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 32352844 - 32352984
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  32352844 ttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcata 32352943  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||| |||||||||||||||||| |||||||||||||    
T  32352944 gggatttatacaagaaattgcaaaaaaattggcccggagcc 32352984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 23467625 - 23467507
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23467625 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 23467526  T
Q  285 gaggtttacacaagaaatt 303  Q
    | | ||||||||| |||||    
T  23467525 gggatttacacaaaaaatt 23467507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 3178699 - 3178840
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    || | |||||||||||||||| ||||||||||| ||||||||    
T  3178799 agggatttacacaagaaattgaaaaaaatttgggccggagcc 3178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 1781757 - 1781900
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcct 326  Q
     || | |||||| ||||||||||||||||||||| || ||||||    
T  1781857 gagggatttacataagaaattgcaaaaaatttgggccagagcct 1781900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 10839513 - 10839371
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    ||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  10839513 ttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattca 10839414  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     |||  |||||| |||||||||||||||||||||  |||||||    
T  10839413 gagaaatttacataagaaattgcaaaaaatttgggtcggagcc 10839371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 43347468 - 43347327
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||     
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcag 43347369  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||   |||||| |||||||||||||||||||||  |||||||    
T  43347368 aggaatttacataagaaattgcaaaaaatttgggtcggagcc 43347327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 20382514 - 20382655
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||| | |||||| ||||||||  ||||||||||| ||||||||    
T  20382614 tagggatttacataagaaatt-aaaaaaatttgggccggagcc 20382655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 19649506 - 19649363
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||| || ||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  282 atagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||| | |||||| |||||||| ||||||| |||  ||||||||    
T  19649406 atagcgatttacataagaaattacaaaaaagttgtgccggagcc 19649363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 36539627 - 36539769
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||| | |||||| ||||||||||| ||||||| | ||||||||    
T  36539727 tagggatttacataagaaattgcataaaatttaggccggagcc 36539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 54546904 - 54547027
Alignment:
Q  189 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 287  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||      
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  288 gtttacacaagaaattgcaaaaaa 311  Q
     |||||  ||||||||||||||||    
T  54547004 atttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 194 - 316
Target Start/End: Complemental strand, 22845484 - 22845362
Alignment:
Q  194 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttac 293  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |      |||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttac 22845385  T
Q  294 acaagaaattgcaaaaaatttgg 316  Q
    | |||||||||||||||||||||    
T  22845384 ataagaaattgcaaaaaatttgg 22845362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 311
Target Start/End: Original strand, 8926762 - 8926889
Alignment:
Q  186 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||| |||||||||     
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcag 8926861  T
Q  284 agaggtttacacaagaaattgcaaaaaa 311  Q
    ||   |||||| | ||||||||||||||    
T  8926862 aggaatttacatatgaaattgcaaaaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 33103739 - 33103866
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||  |||||||||||||| |||||||||||||| |     
T  33103739 ttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaatttaa 33103838  T
Q  284 agaggtttacacaagaaattgcaaaaaa 311  Q
     |   |||||| ||||||||||||||||    
T  33103839 gggaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 208 - 321
Target Start/End: Complemental strand, 46685891 - 46685779
Alignment:
Q  208 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaa 307  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||  ||||||||||||||| |  | | |||||| |||||| |||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa-tgcaa 46685793  T
Q  308 aaaatttggcccgg 321  Q
    ||||||||| ||||    
T  46685792 aaaatttgggccgg 46685779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 47889731 - 47889823
Alignment:
Q  195 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 285  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatag 47889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 323
Target Start/End: Complemental strand, 6280491 - 6280352
Alignment:
Q  185 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||     
T  6280491 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 6280392  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccggag 323  Q
     ||  |||||| ||||||||||| ||||||| | ||||||    
T  6280391 ggaaatttacataagaaattgcacaaaatttaggccggag 6280352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 51336231 - 51336339
Alignment:
Q  210 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca-tagaggtttacacaagaaattgcaaa 308  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||||  ||||||||||| |||||||  |||  |||||| || ||||||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggaga-atttacataaaaaattgcaaa 51336329  T
Q  309 aaatttggcc 318  Q
    ||| ||||||    
T  51336330 aaaattggcc 51336339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 48206849 - 48206943
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaa 277  Q
    |||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| |||||| | ||||||||||| ||||||||||||    
T  48206849 ttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataagaa 48206943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 36826087 - 36825965
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| || ||||||| ||||||||||        |||| || ||||||| ||||||| |    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt--------tataagggtttatatgagaaattta 36825996  T
Q  283 tagaggtttacacaagaaattgcaaaaaatt 313  Q
     ||||||||||| ||||||||||||||||||    
T  36825995 aagaggtttacataagaaattgcaaaaaatt 36825965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 27642723 - 27642787
Alignment:
Q  251 cccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttg 315  Q
    ||||||||||| |||||||||||||||||||| |  | |||||| ||||||||||||||||||||    
T  27642723 cccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttg 27642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 316
Target Start/End: Complemental strand, 19644458 - 19644327
Alignment:
Q  189 aacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaa-ttgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||  | |||||||||||||||| ||||||||  ||||||| |||| ||| |||  |||||||||  ||||||||||| |||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcata 19644359  T
Q  285 gaggtttacacaagaaattgcaaaaaatttgg 316  Q
    |   |||||| || ||||| ||||||| ||||    
T  19644358 gcaatttacataaaaaattacaaaaaaattgg 19644327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 791812 - 791906
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    |||||||||||| ||||| |  ||||||||||||| |||   |||||| ||||||| |||||||||| | ||||||||||| ||||||||||||||||    
T  791812 ttgcaacacattaataggtgtttacataagaaattacaa---aataatcaaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 39352219 - 39352321
Alignment:
Q  213 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaat 312  Q
    ||||||||||||||||||||     | |||||||||||   ||||||||| ||||||||||||||||| | |||  |||| | ||||||||||||||| |    
T  39352219 gaaattgcaagcaaataatattttttttaaagaaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgcaaaaatt 39352317  T
Q  313 ttgg 316  Q
    ||||    
T  39352318 ttgg 39352321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 185 - 320
Target Start/End: Complemental strand, 14309929 - 14309794
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309929 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 14309830  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccg 320  Q
    | | ||||||||||||||||||||||||||||||||    
T  14309829 gggatttacacaagaaattgcaaaaaatttggcccg 14309794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 9232029 - 9231845
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnn-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9232029 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgt 9231930  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  9231929 aaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaaattggcccggagcc 9231845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 24694826 - 24694642
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694826 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 24694727  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24694726 aaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 24694642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 13627494 - 13627677
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 241  Q
    |||||||||||||| |||||| ||||||||| ||         |||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  13627494 agtggcggagccaggaatattctaaagcccgggcaaaaaaattttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgta 13627593  T
Q  242 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  13627594 aagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 13627677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 1728035 - 1727923
Alignment:
Q  214 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatt 313  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatt 1727936  T
Q  314 tggcccggagcct 326  Q
    |||||||||||||    
T  1727935 tggcccggagcct 1727923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 28750783 - 28750641
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     |    |||||| |||||||||||||||| ||||||| |||||    
T  28750683 gaagaatttacataagaaattgcaaaaaaattggcccagagcc 28750641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 27863695 - 27863828
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||     
T  27863695 ttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcag 27863794  T
Q  284 agaggtttacacaag-aaattgcaaaaaatttgg 316  Q
    |||  |||||| ||| |||||||||||| |||||    
T  27863795 agaaatttacataagaaaattgcaaaaagtttgg 27863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 315
Target Start/End: Complemental strand, 13103246 - 13103119
Alignment:
Q  190 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 287  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||  | ||||||||||||||||| ||      
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  288 gtttacacaagaaattgcaaaaaatttg 315  Q
     |||||| || |||||||||||||||||    
T  13103146 atttacataaaaaattgcaaaaaatttg 13103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 34103703 - 34103808
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 305  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||| ||   |||||| || ||||| |    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacataataaattac 34103802  T
Q  306 aaaaaa 311  Q
    ||||||    
T  34103803 aaaaaa 34103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 11212689 - 11212765
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| || |||||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||||| || |||||||| | |||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 24497646 - 24497564
Alignment:
Q  244 gaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcct 326  Q
    ||||||||||||||||||||| ||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggagcct 24497564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 11084607 - 11084659
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084607 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 11084664 - 11084724
Alignment:
Q  262 gggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccgga 322  Q
    ||| ||||||||||||||||||||   ||||||||||||||||||||||| ||||| ||||    
T  11084664 ggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggctcgga 11084724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  240 taaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  188 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 249  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 9e-65; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 14942219 - 14942035
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||         || |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14942219 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatgt 14942120  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  14942119 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 14942035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 144 - 325
Target Start/End: Original strand, 29846396 - 29846579
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 241  Q
    |||||||||||| |||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846396 tggcggagccaggaatattgtaaagcccgagcgaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 29846495  T
Q  242 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  29846496 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 29846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 42769889 - 42769749
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42769889 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 42769790  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  42769789 gggatttacacaagaaattgcaaaaaatttggcccggagcc 42769749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 40277419 - 40277279
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40277419 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttata 40277320  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||| || |||||||||||||||||||||||||||    
T  40277319 gggatttacataaaaaattgcaaaaaatttggcccggagcc 40277279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 185 - 324
Target Start/End: Complemental strand, 14186569 - 14186430
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14186569 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcata 14186470  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagc 324  Q
    | | ||||||||||||||| ||||||||||||||||||||    
T  14186469 gggatttacacaagaaattacaaaaaatttggcccggagc 14186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 24145448 - 24145323
Alignment:
Q  15 gaaccataaaatcaaatttaagattttaaaacaaagtgaagttggagggaaaacataggatttgaaaaatttagggataaaatgtgacccacatattaaa 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24145448 gaaccacaaaatcaaatttaagattttaaaacaaagtgaagttggagggaaaacataggatttgaaaaatttagggataaaatgtgaccaacatattaaa 24145349  T
Q  115 aacatcacaattattatgattatgat 140  Q
    ||||||||||||||||||||||||||    
T  24145348 aacatcacaattattatgattatgat 24145323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 19181545 - 19181679
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19181545 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 19181644  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggccc 319  Q
    |   |||||||||||||||||||||||||||||||    
T  19181645 ggaatttacacaagaaattgcaaaaaatttggccc 19181679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 6318592 - 6318446
Alignment:
Q  185 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  282 atagaggtttacacaagaaattg-caaaaaatttggcccggagccta 327  Q
    |||| | |||||| |||||||||  |||||| |||| ||||||||||    
T  6318492 atagggatttacataagaaattgaaaaaaaaattgggccggagccta 6318446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 144 - 280
Target Start/End: Complemental strand, 3598039 - 3597903
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaa 243  Q
    |||||||||||||||||||||||||  |||||         |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  3598039 tggcggagccagaaatattgtaaagttcgagcaaaaaaaatttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaa 3597940  T
Q  244 gaaattgcccaatttatagggatttatataagaaatt 280  Q
    ||||||| |||||||||||||||||| | ||||||||    
T  3597939 gaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 1387420 - 1387319
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    ||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||    
T  1387420 ttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattcat 1387321  T
Q  284 ag 285  Q
    ||    
T  1387320 ag 1387319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 14539837 - 14539704
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||| |  || ||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||    
T  14539837 ttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattca 14539738  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttgg 316  Q
     ||    ||||| |||||||||||||||||||||    
T  14539737 gaggaaattacataagaaattgcaaaaaatttgg 14539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 33009667 - 33009799
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    ||||||||| |||||| |||  ||||||| ||||||||||||||||||||  ||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  33009667 ttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaattc 33009766  T
Q  282 atagaggtttacacaagaaattgcaaaaaattt 314  Q
    |||| | |||| | ||||||||| |||||||||    
T  33009767 atagggatttatataagaaattgtaaaaaattt 33009799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 3956524 - 3956709
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| | |||||||||||||| ||         ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| |    
T  3956524 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattt 3956623  T
Q  241 -aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     |||||||||| |||||||| |||| ||||||||| |||||||||| | |||||| || |||||| |||   ||||| ||||||||    
T  3956624 taaagaaattgtccaatttacaggggtttatataataaattcatagggatttacataaaaaattgaaaattttttgggccggagcc 3956709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 306
Target Start/End: Complemental strand, 41674840 - 41674716
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    |||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||||| || ||||||||| ||||||    
T  41674840 ttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattc 41674741  T
Q  282 atagaggtttacacaagaaattgca 306  Q
    | |||| |||||| |||||||||||    
T  41674740 agagagatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 43139766 - 43139882
Alignment:
Q  209 ataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgca 306  Q
    |||||||||||||||||||||||||||||  | |||||||||||| |||||||||||| ||||||||||||||| | ||    ||||| |||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaaattgca 43139865  T
Q  307 aaaaatttggcccggag 323  Q
    ||||| |||| ||||||    
T  43139866 aaaaaattggaccggag 43139882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 40780050 - 40780179
Alignment:
Q  185 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg-atttatataagaaattc 281  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| |||||| | |||||||||||  ||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  282 atagaggtttacacaagaaattgcaaaaaa 311  Q
    | ||   |||||| |||||||| |||||||    
T  40780150 agaggaatttacataagaaattacaaaaaa 40780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 28321836 - 28321703
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || |||||||||||||||||| || ||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T
Q  283 -tagaggtttacacaagaaattgcaaaaaatttgg 316  Q
      |||  |||||| |||||||||||||||| ||||    
T  28321736 ggaga-atttacataagaaattgcaaaaaaattgg 28321703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| |||||| | |||||||| ||||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 2888058 - 2888164
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 304  Q
    |||||||||  |||| ||||| |||||||||| | |||| ||||||  |||||||||||  ||||||||| |||||||||||| |||||| ||||||||     
T  2888058 tacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaatta 2888157  T
Q  305 caaaaaa 311  Q
    |||||||    
T  2888158 caaaaaa 2888164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 3597917 - 3597881
Alignment:
Q  289 tttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||||||||||||||||||||||||    
T  3597917 tttacacaagaaattgcaaaaaatttggcccggagcc 3597881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 32486239 - 32486320
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg 264  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| ||||||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggg 32486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  209 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    |||| |||||||||||||||||| ||||||  |||||||||| |||||||||||    |||||||||||||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 398
Target Start/End: Complemental strand, 24145332 - 24145301
Alignment:
Q  367 tgattatgattgtgatgtaagatgtatatgtt 398  Q
    ||||||||||||||||||||||||||||||||    
T  24145332 tgattatgattgtgatgtaagatgtatatgtt 24145301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 38397595 - 38397735
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38397595 ttgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 38397694  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  38397695 gggatttacacaagaaattgcaaaaaatttggcccggagcc 38397735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 6257541 - 6257401
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  6257541 ttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcata 6257442  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  6257441 gggatttacacaagaaattgcaaaaaatttggcccggagcc 6257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 37169164 - 37169024
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37169164 ttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 37169065  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | ||||||||| |||||||||||||||||||||||||||    
T  37169064 gggatttacacaaaaaattgcaaaaaatttggcccggagcc 37169024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 142 - 322
Target Start/End: Original strand, 23218438 - 23218619
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||         || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23218438 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatgt 23218537  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccgga 322  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  23218538 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaactttggcccgga 23218619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 16618701 - 16618561
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||  |||||||||||||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||| ||||||||||||||||||||    
T  16618601 gggatttacacaagaaattgtaaaaaatttggcccggagcc 16618561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 185 - 324
Target Start/End: Complemental strand, 39862618 - 39862479
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39862618 ttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcata 39862519  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagc 324  Q
    |   ||||||||||||||||||||||| ||||||||||||    
T  39862518 ggaatttacacaagaaattgcaaaaaaattggcccggagc 39862479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 15631613 - 15631751
Alignment:
Q  188 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata-gggatttatataagaaattcataga 286  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||     
T  15631613 caacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagg 15631712  T
Q  287 ggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | |||| ||||||||||| ||||||||||||| ||||||    
T  15631713 gatttatacaagaaattgtaaaaaatttggcctggagcc 15631751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 8457096 - 8456954
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||| | |||||| ||||||||| ||||||||||| ||||||||    
T  8456996 tagggatttacataagaaattgaaaaaaatttgggccggagcc 8456954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 142 - 311
Target Start/End: Original strand, 10081097 - 10081268
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tg 239  Q
    |||||||||||||| | |||||||||||||| ||         |||||||||||||||||| |  |||||||||||||| ||||||||||||||||| |     
T  10081097 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatc 10081196  T
Q  240 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 311  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||| ||||||    
T  10081197 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacataagaaattgaaaaaaa 10081268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 185 - 323
Target Start/End: Complemental strand, 36769206 - 36769067
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| ||||||||||||| |||| |||| | |||||||||||||||||     
T  36769206 ttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattcag 36769107  T
Q  284 agaggtttacacaagaaattgcaaaaaatttggcccggag 323  Q
    ||   |||||| ||||||||||||||||||||| ||||||    
T  36769106 aggaatttacataagaaattgcaaaaaatttgggccggag 36769067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 188 - 311
Target Start/End: Complemental strand, 614522 - 614397
Alignment:
Q  188 caacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 285  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||| ||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  286 aggtttacacaagaaattgcaaaaaa 311  Q
       |||||| ||||||||||||||||    
T  614422 gaatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 11856290 - 11856432
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     || | |||||| |||||||| || |||| |||| ||| ||||    
T  11856390 gagcgatttacataagaaattacagaaaacttgggccgaagcc 11856432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 9738094 - 9737981
Alignment:
Q  206 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata--gaggtttacacaagaaat 302  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||  |||||| |||||||    
T  9738094 tacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaat 9737995  T
Q  303 tgcaaaaaatttgg 316  Q
    || |||||| ||||    
T  9737994 tgaaaaaaaattgg 9737981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 25560460 - 25560330
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||   ||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  283 tagaggtttacacaagaaattgcaaaaaatt 313  Q
    ||  | |||||| ||||||||| ||||||||    
T  25560360 taaggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 185 - 313
Target Start/End: Original strand, 42119617 - 42119747
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||||||||| | ||||||||||| ||||||||||| | |||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T
Q  283 tagaggtttacacaagaaattgcaaaaaatt 313  Q
     ||   |||||| |||||||| |||||||||    
T  42119717 gaggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 27916134 - 27916266
Alignment:
Q  185 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    ||||||||||||||||||  ||  | |||||||||||||| |||||||||||||| | ||| |||||||| |||||||||||  ||||||||||||||||    
T  27916134 ttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattc 27916233  T
Q  282 atagaggtttacacaagaaattgcaaaaaattt 314  Q
    | ||   |||||| |||||||||||||||||||    
T  27916234 agaggaatttacataagaaattgcaaaaaattt 27916266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 29491521 - 29491414
Alignment:
Q  208 cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgca 306  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||| || ||||||||||||||||||  |||||| |||||||||||    
T  29491521 cataagaaattgcaagcaaataatcaaaaaatttaaagaa-ttgtccaatttataggggtt-atataagaaattcatagaaatttacataagaaattgca 29491424  T
Q  307 aaaaatttgg 316  Q
    ||| ||||||    
T  29491423 aaagatttgg 29491414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 33271377 - 33271263
Alignment:
Q  209 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaa 308  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||  |   |||||| ||||||||| |||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaaattgtaaa 33271278  T
Q  309 aaatttggcccggag 323  Q
    ||| |||| ||||||    
T  33271277 aaaattgggccggag 33271263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 6174762 - 6174874
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata--gggatttatataagaaattcatagaggtttacacaagaaatt 303  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||  ||| ||||||||||||||||| |    |||||  ||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaagaaatt 6174861  T
Q  304 gcaaaaaatttgg 316  Q
     ||||||||||||    
T  6174862 acaaaaaatttgg 6174874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 3341230 - 3341110
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatat-aagaaattcatagaggtttacacaagaaattg 304  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| ||||||||||||||  |||||| || ||||||| |||  |||||| |||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattcagaga-atttacataagaaattg 3341132  T
Q  305 caaaaaatttggcccggagcct 326  Q
    |||||||||||| || ||||||    
T  3341131 caaaaaatttgggccagagcct 3341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 10115185 - 10115297
Alignment:
Q  214 aaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaat 312  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||||| ||| |||||||||||||| || ||   |||||| || |||||||||||||     
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaaaaa 10115284  T
Q  313 ttggcccggagcc 325  Q
    |||| ||||||||    
T  10115285 ttgggccggagcc 10115297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 29790328 - 29790219
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 305  Q
    |||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||  | |||||||||||||||||||    |||||| |||||||||     
T  29790328 tacataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattgt 29790230  T
Q  306 aaaaaatttgg 316  Q
    ||||| |||||    
T  29790229 aaaaattttgg 29790219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 10052606 - 10052491
Alignment:
Q  211 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaa 309  Q
    |||||||||||||||||||||  |||| | |||||||||| || |||||||||   |||||||||| | |||| || | |||||| ||||||||| ||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaa 10052507  T
Q  310 aatttggcccggagcc 325  Q
    || |||| ||||||||    
T  10052506 aaattgggccggagcc 10052491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  232 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    ||||||| ||||| ||||||||||||||||||  |||||||||||||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 33188451 - 33188403
Alignment:
Q  207 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaa 255  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgcccaa 33188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 22903252 - 22903329
Alignment:
Q  185 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaata--ataaaaaatg-taaagaaattgcccaattt 258  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| |  ||||||||   |||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaaaagaataaaaaaaactaaagaaattgcccaattt 22903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 15475505 - 15475408
Alignment:
Q  206 tacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaat 302  Q
    ||||||||||||| | || |||||||| |||||| ||||||||||   |||||||||  ||||||||||| ||||| | |||  |||||| |||||||    
T  15475505 tacataagaaattacgagaaaataatacaaaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 1535768 - 1535908
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1535768 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 1535867  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  1535868 gggatttacacaagaaattgcaaaaaatttggcccggagcc 1535908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 49284354 - 49284494
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49284354 ttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 49284453  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  49284454 gggatttacacaagaaattgcaaaaaatttggcccggagcc 49284494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 25954703 - 25954887
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25954703 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 25954802  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  25954803 aaagaaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccggagcc 25954887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 34240993 - 34241130
Alignment:
Q  188 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  34240993 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataggg 34241092  T
Q  288 gtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     | |||||||||||||||||||||||||||||||||||    
T  34241093 atctacacaagaaattgcaaaaaatttggcccggagcc 34241130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 37801439 - 37801255
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801439 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 37801340  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  37801339 aaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattgcaaaaaatttagcccggagcc 37801255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 142 - 303
Target Start/End: Original strand, 52632471 - 52632633
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||         || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52632471 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatgt 52632570  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  52632571 aaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 36012316 - 36012176
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36012316 ttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 36012217  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | ||||||||| |||||||||||||||||||||| ||||    
T  36012216 gggatttacacaaaaaattgcaaaaaatttggcccgaagcc 36012176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 35018933 - 35019072
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||    
T  35018933 ttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatataagaaattcata 35019032  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||| |||||||||||||| |||||    
T  35019033 g-gatttacacaagaaattgtaaaaaatttggcccagagcc 35019072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 46583669 - 46583554
Alignment:
Q  188 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 287  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  46583669 caacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcataggg 46583570  T
Q  288 gtttacacaagaaatt 303  Q
     ||||||||| |||||    
T  46583569 atttacacaaaaaatt 46583554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 16338318 - 16338207
Alignment:
Q  211 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||||| ||||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 16338219  T
Q  311 atttggcccgga 322  Q
    | ||||||||||    
T  16338218 aattggcccgga 16338207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 17888683 - 17888541
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||   |||||| ||||||||| ||||||||||| ||||||||    
T  17888583 taggaatttacataagaaattgaaaaaaatttgggccggagcc 17888541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 31377342 - 31377526
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnnttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat-aaaaaatg 239  Q
    |||||||||||||| | |||||||||||||| ||         ||||||||||||||||| ||  |||||||||||||||||||||||| | |||||||     
T  31377342 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatc 31377441  T
Q  240 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||| | |||||| ||||||||| ||||||||||| ||||||||    
T  31377442 taaagaaattgcccaatttatagagggttatataagaaattcatagggatttacataagaaattg-aaaaaatttgggccggagcc 31377526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 16338419 - 16338309
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnn-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    ||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338419 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 16338320  T
Q  241 aaagaaattgc 251  Q
    |||||||||||    
T  16338319 aaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 20818584 - 20818695
Alignment:
Q  206 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 304  Q
    ||||||||||||||||| |||||||| ||||||| |||| |||||| ||||||||||||  |||||||||||||||||||| | |||||| |||||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttacaaaagaaattg 20818683  T
Q  305 caaaaaatttgg 316  Q
    ||||||||||||    
T  20818684 caaaaaatttgg 20818695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 54090176 - 54090307
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 283  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| |  ||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  284 agaggtttacacaagaaattgcaaaaaatttg 315  Q
    || | |||||| ||| ||||||||||||||||    
T  54090276 agggatttacaaaaggaattgcaaaaaatttg 54090307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 324
Target Start/End: Original strand, 46473989 - 46474130
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||  ||||||||| || ||||||||| |||||||    
T  46473989 ttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattca 46474088  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagc 324  Q
     ||   |||||| ||||||||||||||||||||| |||||||    
T  46474089 caggaatttacataagaaattgcaaaaaatttgggccggagc 46474130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 215 - 322
Target Start/End: Complemental strand, 10094495 - 10094387
Alignment:
Q  215 aattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatt 313  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||||||||||| ||||||||||||||||| |||  |||||| |||||||| |||||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatt 10094396  T
Q  314 tggcccgga 322  Q
    ||| |||||    
T  10094395 tgggccgga 10094387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 313
Target Start/End: Original strand, 11054448 - 11054581
Alignment:
Q  185 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgcccaatttatagggatttatataagaaat 279  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| |||||||||||||||| | ||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  280 tcatagaggtttacacaagaaattgcaaaaaatt 313  Q
    |||||| | |||||| ||||||||||||||||||    
T  11054548 tcatagggatttacataagaaattgcaaaaaatt 11054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 12792364 - 12792231
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  12792364 ttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattca 12792265  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttgg 316  Q
     |||  |||||| |||||||| ||||||| ||||    
T  12792264 gagaaatttacataagaaattacaaaaaaattgg 12792231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 47084056 - 47084149
Alignment:
Q  232 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||  |||||| ||||||||||||||||||| | ||||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaatttaggccggagcc 47084149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 9742661 - 9742538
Alignment:
Q  190 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 287  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| ||      
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  288 gtttacacaagaaattgcaaaaaa 311  Q
     |||||| ||||||||| ||||||    
T  9742561 atttacataagaaattgtaaaaaa 9742538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 36851446 - 36851378
Alignment:
Q  257 ttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 36851378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 50328791 - 50328919
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||| |||  ||||||| ||||||||||  |||||||||||| | ||||||||||| ||||||||||| | ||||||||||||||| |    
T  50328791 ttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaa 50328890  T
Q  283 tagaggtttacacaagaaattgcaaaaaa 311  Q
     ||   |||||| ||||||||||||||||    
T  50328891 gaggaatttacaaaagaaattgcaaaaaa 50328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 35322837 - 35322704
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| |||||||||||  |||||||||| | ||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttgg 316  Q
     |||  |||| | || ||||| ||||||| ||||    
T  35322737 gagaaatttatataaaaaattacaaaaaaattgg 35322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 325
Target Start/End: Complemental strand, 19124849 - 19124729
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 304  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||  ||||||| ||   ||||||||||||||||| ||   |||||| |||||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaattg 19124750  T
Q  305 caaaaaatttggcccggagcc 325  Q
    ||||||| || | ||||||||    
T  19124749 caaaaaaattaggccggagcc 19124729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  232 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 49902465 - 49902605
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  49902465 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcata 49902564  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  49902565 gggatttacacaagaaattgcaaaaaatttggcccggagcc 49902605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 48392537 - 48392397
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48392537 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcata 48392438  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    | | ||||||||||||||||||||||| ||||| |||||||    
T  48392437 gggatttacacaagaaattgcaaaaaaattggctcggagcc 48392397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 42517473 - 42517285
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517473 agtggcggagccaggaatattgtaaagcccgtgcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 42517374  T
Q  241 aaagaaattgcccaatttataggg----atttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||||||||||||||||||||||||     |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  42517373 aaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 42517285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 3346783 - 3346918
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  3346783 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 3346882  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccg 320  Q
    | | ||||||||| ||||||||||||||||||||||    
T  3346883 gggatttacacaacaaattgcaaaaaatttggcccg 3346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 5974988 - 5975125
Alignment:
Q  188 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttaggg 5975087  T
Q  288 gtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     |||||||||||||||| ||||||||||||||||||||    
T  5975088 atttacacaagaaattgaaaaaaatttggcccggagcc 5975125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 7742954 - 7742770
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||| ||||||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742954 agtggcggagccaggaatattgtaaagtccgagcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 7742855  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||| || || |||||||    
T  7742854 aaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattgcaaaaaaatttgctcggagcc 7742770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 47022699 - 47022839
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||    
T  47022699 ttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcata 47022798  T
Q  285 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  47022799 gagatttacacaagaaattgcaaaaaatttggcccggagcc 47022839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 142 - 325
Target Start/End: Complemental strand, 10156191 - 10156007
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    ||||||||||||||||||||||||||||| | ||         || |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10156191 agtggcggagccagaaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatat 10156092  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
    |||||||||| |||||||||||   ||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  10156091 aaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcc 10156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 29149679 - 29149561
Alignment:
Q  185 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 284  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  29149679 ttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattcata 29149580  T
Q  285 gaggtttacacaagaaatt 303  Q
    | | ||||||||| |||||    
T  29149579 gggatttacacaaaaaatt 29149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 303
Target Start/End: Original strand, 23908238 - 23908400
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnn-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  23908238 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaacat 23908337  T
Q  241 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 303  Q
    |||||||||| ||||||||||||||||||||||||||||||||||   ||||||||| |||||    
T  23908338 aaagaaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 38859849 - 38859988
Alignment:
Q  188 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 285  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  286 aggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
       |||||| ||||||||| ||||||||||| ||||||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcc 38859988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 10907781 - 10907639
Alignment:
Q  185 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| |  |||||||||| |||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     ||   |||||| ||||||||||||||||||||| ||||||||    
T  10907681 gaggaatttacataagaaattgcaaaaaatttgggccggagcc 10907639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 30745361 - 30745482
Alignment:
Q  206 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 304  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||  |||||| || ||||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30745460  T
Q  305 caaaaaatttggcccggagcct 326  Q
    ||||| ||||||  ||||||||    
T  30745461 caaaatatttgggtcggagcct 30745482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 30766812 - 30766933
Alignment:
Q  206 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 304  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||  |||||| || ||||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30766911  T
Q  305 caaaaaatttggcccggagcct 326  Q
    ||||| ||||||  ||||||||    
T  30766912 caaaatatttgggtcggagcct 30766933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 5558334 - 5558431
Alignment:
Q  213 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 311  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||  | ||||||||| ||||||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcgga-aggtttacataagaaattgcaaaaaa 5558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 42456566 - 42456700
Alignment:
Q  185 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttatagggatttatataagaaattc 281  Q
    |||||||||||||||||||  |  ||||||||||||||||| | ||||||||   | | |||||||||||||||||||||||| ||||||||||||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattc 42456665  T
Q  282 atagaggtttacacaagaaattgcaaaaaatttgg 316  Q
    ||||   |||||| ||||||| |||||||||||||    
T  42456666 ataggaatttacataagaaatagcaaaaaatttgg 42456700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 26835333 - 26835461
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| ||||||  |||||||||||  |||||||||||||||||    
T  26835333 ttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattca 26835432  T
Q  283 tagaggtttacacaagaaattgcaaaaaa 311  Q
    ||    |||||| || |||||||||||||    
T  26835433 tatgaatttacataataaattgcaaaaaa 26835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 37189697 - 37189774
Alignment:
Q  245 aaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggag 323  Q
    |||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc-aaaaatttgggccggag 37189774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 26511739 - 26511625
Alignment:
Q  210 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaa 309  Q
    |||||||||| ||| ||||||| |||||| ||||||||||   ||||||| ||| ||||||||||||||||||  | |||||||| ||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca-gggggtttacataagaaattgcaaaa 26511641  T
Q  310 aatttggcccggagcc 325  Q
    || || | ||||||||    
T  26511640 aaattaggccggagcc 26511625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 30252856 - 30252787
Alignment:
Q  206 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataa 274  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| | |||||||||||||||||||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataa 30252787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 13131914 - 13132017
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 305  Q
    |||||||||||||||||| | ||||  |||||  ||||||||||| ||||||||||| ||||||||||| ||||| | ||   |||||| |||||||| |    
T  13131914 tacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaaattac 13132013  T
Q  306 aaaa 309  Q
    ||||    
T  13132014 aaaa 13132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 14796871 - 14796998
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T
Q  283 tagaggtttacacaagaaattgcaaaaa 310  Q
     ||   |||||| || ||||||||||||    
T  14796971 gaggaatttacataaaaaattgcaaaaa 14796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 14805745 - 14805872
Alignment:
Q  185 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T
Q  283 tagaggtttacacaagaaattgcaaaaa 310  Q
     ||   |||||| || ||||||||||||    
T  14805845 gaggaatttacataaaaaattgcaaaaa 14805872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 44107521 - 44107382
Alignment:
Q  185 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||    ||||||||||| ||||||||| ||| |||    
T  44107521 ttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatca 44107422  T
Q  283 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 325  Q
     ||   |||||| |||||   |||||||| |||| ||||||||    
T  44107421 gaggaatttacataagaa---gcaaaaaaattggaccggagcc 44107382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 45968685 - 45968761
Alignment:
Q  206 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 282  Q
    |||||||||||||||||| ||||||| |||||| || | |||||| |||||||||| |   |||||||| |||||||    
T  45968685 tacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattca 45968761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  207 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 249  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 54542 - 54653
Alignment:
Q  211 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||||| ||||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 54641  T
Q  311 atttggcccgga 322  Q
    | ||||||||||    
T  54642 aattggcccgga 54653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 54441 - 54551
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnn-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 240  Q
    ||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54441 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 54540  T
Q  241 aaagaaattgc 251  Q
    |||||||||||    
T  54541 aaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 34563 - 34457
Alignment:
Q  206 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 304  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||  |||||| || | |||||| |||||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaattg 34464  T
Q  305 caaaaaa 311  Q
    |||||||    
T  34463 caaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 20915 - 20836
Alignment:
Q  232 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 311  Q
    ||||||| |||| |||||| ||||||||||| | ||||||||||||||||| ||   |||||| ||||||||||||||||    
T  20915 aaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaa 20836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 85547 - 85592
Alignment:
Q  235 aaatgtaaagaaattgcccaatttatagggatttatataagaaatt 280  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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