View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_low_12 (Length: 502)

Name: NF1386_low_12
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_low_12
NF1386_low_12
[»] chr8 (19 HSPs)
chr8 (184-324)||(35806791-35806931)
chr8 (142-324)||(22324549-22324733)
chr8 (184-324)||(21525355-21525495)
chr8 (187-319)||(42013872-42014004)
chr8 (184-324)||(26021392-26021533)
chr8 (184-324)||(33934360-33934500)
chr8 (184-324)||(42072425-42072565)
chr8 (205-325)||(24065291-24065411)
chr8 (184-321)||(19334779-19334917)
chr8 (239-324)||(16523158-16523243)
chr8 (187-315)||(16818973-16819105)
chr8 (241-313)||(16591377-16591449)
chr8 (205-314)||(43282852-43282962)
chr8 (435-483)||(42358186-42358234)
chr8 (205-302)||(21488084-21488181)
chr8 (205-273)||(34697431-34697500)
chr8 (184-310)||(10112042-10112170)
chr8 (184-310)||(2271197-2271318)
chr8 (139-172)||(16523018-16523051)
[»] chr7 (17 HSPs)
chr7 (184-324)||(34707113-34707253)
chr7 (184-324)||(44164734-44164874)
chr7 (184-324)||(10576670-10576810)
chr7 (184-324)||(24320430-24320570)
chr7 (141-322)||(32876523-32876706)
chr7 (195-324)||(34259526-34259655)
chr7 (184-322)||(29555932-29556070)
chr7 (184-324)||(29238134-29238274)
chr7 (202-324)||(29981104-29981226)
chr7 (184-324)||(33057648-33057789)
chr7 (184-315)||(19334560-19334693)
chr7 (184-324)||(17303105-17303248)
chr7 (184-324)||(10334173-10334315)
chr7 (210-310)||(9770682-9770782)
chr7 (184-310)||(26284383-26284510)
chr7 (231-310)||(15017817-15017896)
chr7 (184-279)||(41853128-41853226)
[»] chr3 (29 HSPs)
chr3 (184-324)||(21853194-21853334)
chr3 (184-324)||(13856096-13856236)
chr3 (184-324)||(44994959-44995100)
chr3 (184-321)||(40845911-40846048)
chr3 (184-324)||(8950495-8950635)
chr3 (184-324)||(32352844-32352984)
chr3 (142-324)||(5391411-5391594)
chr3 (184-302)||(23467507-23467625)
chr3 (184-324)||(3178699-3178840)
chr3 (184-325)||(1781757-1781900)
chr3 (184-324)||(10839371-10839513)
chr3 (184-324)||(43347327-43347468)
chr3 (184-324)||(20382514-20382655)
chr3 (184-324)||(19649363-19649506)
chr3 (184-324)||(36539627-36539769)
chr3 (188-310)||(54546904-54547027)
chr3 (193-315)||(22845362-22845484)
chr3 (185-310)||(8926762-8926889)
chr3 (184-310)||(33103739-33103866)
chr3 (207-320)||(46685779-46685891)
chr3 (194-284)||(47889731-47889823)
chr3 (184-322)||(6280352-6280491)
chr3 (209-317)||(51336231-51336339)
chr3 (184-276)||(48206849-48206943)
chr3 (184-312)||(36825965-36826087)
chr3 (250-314)||(27642723-27642787)
chr3 (188-315)||(19644327-19644458)
chr3 (184-279)||(791812-791906)
chr3 (212-315)||(39352219-39352321)
[»] chr6 (16 HSPs)
chr6 (184-319)||(14309794-14309929)
chr6 (142-324)||(9231845-9232029)
chr6 (142-324)||(24694642-24694826)
chr6 (184-324)||(13627537-13627677)
chr6 (213-325)||(1727923-1728035)
chr6 (184-324)||(28750641-28750783)
chr6 (184-315)||(27863695-27863828)
chr6 (189-314)||(13103119-13103246)
chr6 (205-310)||(34103703-34103808)
chr6 (205-281)||(11212689-11212765)
chr6 (184-281)||(11279536-11279634)
chr6 (243-325)||(24497564-24497646)
chr6 (184-236)||(11084607-11084659)
chr6 (261-321)||(11084664-11084724)
chr6 (239-279)||(8412717-8412757)
chr6 (187-248)||(24500767-24500830)
[»] chr1 (26 HSPs)
chr1 (142-324)||(48392397-48392579)
chr1 (184-324)||(49902465-49902605)
chr1 (142-324)||(42517285-42517473)
chr1 (184-319)||(3346783-3346918)
chr1 (187-324)||(5974988-5975125)
chr1 (142-324)||(7742770-7742954)
chr1 (184-324)||(47022699-47022839)
chr1 (142-324)||(10156007-10156191)
chr1 (184-302)||(29149561-29149679)
chr1 (142-302)||(23908238-23908400)
chr1 (187-324)||(38859849-38859988)
chr1 (184-324)||(10907639-10907781)
chr1 (205-325)||(30745361-30745482)
chr1 (205-325)||(30766812-30766933)
chr1 (212-310)||(5558334-5558431)
chr1 (184-315)||(42456566-42456700)
chr1 (184-310)||(26835333-26835461)
chr1 (244-322)||(37189697-37189774)
chr1 (209-324)||(26511625-26511739)
chr1 (205-273)||(30252787-30252856)
chr1 (205-308)||(13131914-13132017)
chr1 (184-309)||(14796871-14796998)
chr1 (184-309)||(14805745-14805872)
chr1 (184-324)||(44107382-44107521)
chr1 (205-281)||(45968685-45968761)
chr1 (206-248)||(8430508-8430551)
[»] chr2 (23 HSPs)
chr2 (142-324)||(14942035-14942219)
chr2 (144-324)||(29846396-29846579)
chr2 (184-324)||(42769749-42769889)
chr2 (184-324)||(40277279-40277419)
chr2 (184-323)||(14186430-14186569)
chr2 (15-140)||(24145323-24145448)
chr2 (184-318)||(19181545-19181679)
chr2 (184-326)||(6318446-6318592)
chr2 (144-279)||(3597903-3598039)
chr2 (184-284)||(1387319-1387420)
chr2 (184-315)||(14539704-14539837)
chr2 (184-313)||(33009667-33009799)
chr2 (184-305)||(41674716-41674840)
chr2 (208-322)||(43139766-43139882)
chr2 (184-324)||(3956567-3956709)
chr2 (184-310)||(40780050-40780179)
chr2 (184-315)||(28321703-28321836)
chr2 (184-279)||(23685406-23685503)
chr2 (205-310)||(2888058-2888164)
chr2 (288-324)||(3597881-3597917)
chr2 (184-263)||(32486239-32486320)
chr2 (208-279)||(25665244-25665316)
chr2 (366-397)||(24145301-24145332)
[»] chr5 (27 HSPs)
chr5 (184-324)||(38397595-38397735)
chr5 (184-324)||(6257401-6257541)
chr5 (184-324)||(37169024-37169164)
chr5 (142-321)||(23218438-23218619)
chr5 (184-324)||(16618561-16618701)
chr5 (184-323)||(39862479-39862618)
chr5 (187-324)||(15631613-15631751)
chr5 (184-324)||(8456954-8457096)
chr5 (184-310)||(10081140-10081268)
chr5 (184-322)||(36769067-36769206)
chr5 (187-310)||(614397-614522)
chr5 (184-324)||(11856290-11856432)
chr5 (205-315)||(9737981-9738094)
chr5 (184-312)||(25560330-25560460)
chr5 (184-312)||(42119617-42119747)
chr5 (184-313)||(27916134-27916266)
chr5 (207-315)||(29491414-29491521)
chr5 (208-322)||(33271263-33271377)
chr5 (205-315)||(6174762-6174874)
chr5 (205-325)||(3341110-3341230)
chr5 (213-324)||(10115185-10115297)
chr5 (205-315)||(29790219-29790328)
chr5 (210-324)||(10052491-10052606)
chr5 (231-279)||(19322058-19322106)
chr5 (206-254)||(33188403-33188451)
chr5 (184-257)||(22903252-22903329)
chr5 (205-301)||(15475408-15475505)
[»] chr4 (27 HSPs)
chr4 (184-324)||(1535768-1535908)
chr4 (184-324)||(49284354-49284494)
chr4 (142-324)||(25954703-25954887)
chr4 (187-324)||(34240993-34241130)
chr4 (142-324)||(37801255-37801439)
chr4 (142-302)||(52632471-52632633)
chr4 (184-324)||(36012176-36012316)
chr4 (184-324)||(35018933-35019072)
chr4 (187-302)||(46583554-46583669)
chr4 (210-321)||(16338207-16338318)
chr4 (184-324)||(17888541-17888683)
chr4 (184-324)||(31377385-31377526)
chr4 (142-250)||(16338309-16338419)
chr4 (205-315)||(20818584-20818695)
chr4 (184-314)||(54090176-54090307)
chr4 (184-323)||(46473989-46474130)
chr4 (214-321)||(10094387-10094495)
chr4 (184-312)||(11054448-11054581)
chr4 (184-280)||(322584-322682)
chr4 (184-315)||(12792231-12792364)
chr4 (231-324)||(47084056-47084149)
chr4 (189-310)||(9742538-9742661)
chr4 (256-324)||(36851378-36851446)
chr4 (184-310)||(50328791-50328919)
chr4 (184-315)||(35322704-35322837)
chr4 (205-324)||(19124729-19124849)
chr4 (231-279)||(5780790-5780838)
[»] scaffold0079 (2 HSPs)
scaffold0079 (210-321)||(54542-54653)
scaffold0079 (142-250)||(54441-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (205-310)||(34457-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (231-310)||(20836-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (234-279)||(85547-85592)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 35806791 - 35806931
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35806791 ttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 35806890  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  35806891 gagatttacacaagaaattgcaaaaaatttggcccggagcc 35806931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 324
Target Start/End: Original strand, 22324549 - 22324733
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324549 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 22324648  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  22324649 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagcc 22324733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 21525355 - 21525495
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  21525355 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 21525454  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | ||||||||||||||||||||||||||| |||||||||    
T  21525455 gggatttacacaagaaattgcaaaaaatttgacccggagcc 21525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 187 - 319
Target Start/End: Original strand, 42013872 - 42014004
Alignment:
Q  187 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |    
T  42013872 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatataagaaattcataggg 42013971  T
Q  287 gtttacacaagaaattgcaaaaaatttggcccg 319  Q
     ||||||||||||||||||||||||||||||||    
T  42013972 atttacacaagaaattgcaaaaaatttggcccg 42014004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 26021392 - 26021533
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  26021392 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcat 26021491  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    || | |||||| |||||||||||||||||||||| |||||||    
T  26021492 agggatttacaaaagaaattgcaaaaaatttggcacggagcc 26021533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 33934500 - 33934360
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  33934500 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcata 33934401  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |   |||||| ||||||||||||||||||||||| ||||||    
T  33934400 ggaatttacaaaagaaattgcaaaaaatttggcctggagcc 33934360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 42072425 - 42072565
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42072425 ttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 42072524  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | ||||||||||||||||||||||| |||||||||||||    
T  42072525 gggatttacacaagaaattgcaaaaaaattggcccggagcc 42072565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 205 - 325
Target Start/End: Original strand, 24065291 - 24065411
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 304  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||| |||| |  |||||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaattgc 24065390  T
Q  305 aaaaaatttggcccggagcct 325  Q
    ||||  |||||||| ||||||    
T  24065391 aaaagttttggcccagagcct 24065411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 321
Target Start/End: Original strand, 19334779 - 19334917
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| | ||||||||| | ||||||||| ||||||||    
T  19334779 ttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcat 19334878  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccgga 321  Q
    |    |||| | ||||||||||||||||||||| |||||    
T  19334879 aagaatttatataagaaattgcaaaaaatttgggccgga 19334917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 16523158 - 16523243
Alignment:
Q  239 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | |||||| | ||||||| ||||||||||| ||||||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcc 16523243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 315
Target Start/End: Complemental strand, 16819105 - 16818973
Alignment:
Q  187 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatg---taaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    ||||||||||||||||  | | |||| |||||||||||||||||||||| |     || ||||||| |||||||||||||| |||||||||||||||||     
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaa 16819006  T
Q  283 agaggtttacacaagaaattgcaaaaaatttgg 315  Q
     ||| |||||| |||||||||||||||||||||    
T  16819005 ggagatttacaaaagaaattgcaaaaaatttgg 16818973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 16591449 - 16591377
Alignment:
Q  241 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaattt 313  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  |||||| |||||||||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaattt 16591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 43282962 - 43282852
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatg-taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 303  Q
    |||||||||||| |||||||||||||||||| |  ||| |||||| |||||||||||||||||||||||| ||||||| |    |||||| |||||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacataagaaattg 43282863  T
Q  304 caaaaaatttg 314  Q
     ||||||||||    
T  43282862 taaaaaatttg 43282852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 42358234 - 42358186
Alignment:
Q  435 aggtggttggttatcttttacatacactgtcagtatgctatgcttagat 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42358234 aggtggttggttatcttttacatacactgtcagtatgctatgcttagat 42358186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 21488084 - 21488181
Alignment:
Q  205 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 302  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||| ||| ||| ||||||||||||| ||   |||||||||||||||    
T  21488084 tacataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaatt 21488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 34697500 - 34697431
Alignment:
Q  205 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgcccaatttatagggatttatataa 273  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| | |||||||||| |||||||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 10112042 - 10112170
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||| ||||||||||  | ||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||| |  ||||||||||||||| |    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaa 10112141  T
Q  282 tagaggtttacacaagaaattgcaaaaaa 310  Q
     ||   |||||| || |||||||||||||    
T  10112142 gaggaatttacataaaaaattgcaaaaaa 10112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 2271197 - 2271318
Alignment:
Q  184 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||||||||||||||| ||  ||||||||||||| |||       |||||||| |||||||||| || ||| ||||||| |||||||||||||||||    
T  2271197 ttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattca 2271289  T
Q  282 tagaggtttacacaagaaattgcaaaaaa 310  Q
        | |||||| ||||||||||||||||    
T  2271290 gcatgatttacataagaaattgcaaaaaa 2271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 16523018 - 16523051
Alignment:
Q  139 ataagtggcggagccagaaatattgtaaagcccg 172  Q
    ||||||||||||||||||| ||||||||||||||    
T  16523018 ataagtggcggagccagaattattgtaaagcccg 16523051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 34707113 - 34707253
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34707113 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 34707212  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  34707213 gggatttacacaagaaattgcaaaaaatttggcccggagcc 34707253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 44164874 - 44164734
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44164874 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 44164775  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||  |||||||||||||||||||||||||||||||||||||    
T  44164774 gaaatttacacaagaaattgcaaaaaatttggcccggagcc 44164734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 10576670 - 10576810
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10576670 ttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 10576769  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  10576770 gggatttacacaagaaattgcaaaaaatttggcccggagcc 10576810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 24320570 - 24320430
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  24320570 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcgta 24320471  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |   |||||||||||||||||||||||||||||||||||||    
T  24320470 ggaatttacacaagaaattgcaaaaaatttggcccggagcc 24320430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 141 - 322
Target Start/End: Complemental strand, 32876706 - 32876523
Alignment:
Q  141 aagtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 238  Q
    ||||||||||||||| |||||||||||||||| ||          ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32876706 aagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatg 32876607  T
Q  239 taaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggag 322  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  32876606 taaagaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccggag 32876523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 34259526 - 34259655
Alignment:
Q  195 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 34259625  T
Q  295 aagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||| |||||||||||||    
T  34259626 aagaaattgcaaaaaaattggcccggagcc 34259655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 184 - 322
Target Start/End: Complemental strand, 29556070 - 29555932
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29556070 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 29555971  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggag 322  Q
    |   ||||||||||||||||  ||||| |||||||||||    
T  29555970 ggaatttacacaagaaattgtcaaaaaattggcccggag 29555932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 29238274 - 29238134
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||    
T  29238274 ttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcata 29238175  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | ||||||||||||||||||||||| |||||||||||||    
T  29238174 gggatttacacaagaaattgcaaaaaaattggcccggagcc 29238134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 29981226 - 29981104
Alignment:
Q  202 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaat 301  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||   |||||||||||||||||||| | ||||||||||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaat 29981127  T
Q  302 tgcaaaaaatttggcccggagcc 324  Q
    ||||||| | |||||||||||||    
T  29981126 tgcaaaagaattggcccggagcc 29981104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 33057789 - 33057648
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||  ||||||||||||  |||||||||||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    || | |||||| ||||||||| |||||| |||| ||||||||    
T  33057689 agggatttacataagaaattgaaaaaaaattgggccggagcc 33057648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 19334693 - 19334560
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||| |||||||||||||||||    
T  19334693 ttgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattca 19334594  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttgg 315  Q
    |||   |||||| |||||||||||||||| ||||    
T  19334593 taggtatttacataagaaattgcaaaaaaattgg 19334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 17303248 - 17303105
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| | || ||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  281 atagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||||   |||||| |||||||||||||||| ||||  |||||||    
T  17303148 ataggaatttacataagaaattgcaaaaaaattgggtcggagcc 17303105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 10334173 - 10334315
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |  |||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     ||   |||||| |||||||||||||||| |||| || |||||    
T  10334273 gaggaatttacataagaaattgcaaaaaaattgggccagagcc 10334315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 9770682 - 9770782
Alignment:
Q  210 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 309  Q
    ||||||||||||||||||||| |||| | ||||||||||| |||||| |||| | |||||||||||||||||    | |||||| |||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaa 9770781  T
Q  310 a 310  Q
    |    
T  9770782 a 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 184 - 310
Target Start/End: Complemental strand, 26284510 - 26284383
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||   | || |||||||||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttata-ctagttttataagaaattcag 26284412  T
Q  283 agag-gtttacacaagaaattgcaaaaaa 310  Q
    || |  |||||| ||||||||||||||||    
T  26284411 agggattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 15017817 - 15017896
Alignment:
Q  231 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 310  Q
    ||||||| ||||||||||| |||||||||| |  ||||||||||||||||| ||   |||||| ||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 41853128 - 41853226
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    ||||||||||||||||| ||  || |||  ||||||||||||||||||  ||||||| |||| |||||| |||| ||||||| ||||| ||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 21853194 - 21853334
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcata 21853293  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  21853294 gggatttacacaagaaattgcaaaaaatttggcccggagcc 21853334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 13856096 - 13856236
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13856096 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcata 13856195  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||| ||||||||||||||||||||    
T  13856196 gggatttacacaagaaattgaaaaaaatttggcccggagcc 13856236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 44995100 - 44994959
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttat-agggatttatataagaaattcat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  44995100 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattcat 44995001  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    || | |||||||||||||||||||||||||||||||||||||    
T  44995000 agggatttacacaagaaattgcaaaaaatttggcccggagcc 44994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 184 - 321
Target Start/End: Complemental strand, 40846048 - 40845911
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40846048 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 40845949  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccgga 321  Q
    | | ||||||||| ||||||||||||||||| ||||||    
T  40845948 gggatttacacaaaaaattgcaaaaaatttgacccgga 40845911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 8950635 - 8950495
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8950635 ttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 8950536  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |   ||||||||||||||||||||||||||||||| |||||    
T  8950535 ggaatttacacaagaaattgcaaaaaatttggcccagagcc 8950495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 32352844 - 32352984
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  32352844 ttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcata 32352943  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||| |||||||||||||||||| |||||||||||||    
T  32352944 gggatttatacaagaaattgcaaaaaaattggcccggagcc 32352984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 142 - 324
Target Start/End: Original strand, 5391411 - 5391594
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 240  Q
    |||||||||||||| |||||||||||||||| ||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391411 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 5391510  T
Q  241 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||  ||||| ||||| |||||||    
T  5391511 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgtcaaaaaattggcgcggagcc 5391594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 23467625 - 23467507
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23467625 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 23467526  T
Q  284 gaggtttacacaagaaatt 302  Q
    | | ||||||||| |||||    
T  23467525 gggatttacacaaaaaatt 23467507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 3178699 - 3178840
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    || | |||||||||||||||| ||||||||||| ||||||||    
T  3178799 agggatttacacaagaaattgaaaaaaatttgggccggagcc 3178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 184 - 325
Target Start/End: Original strand, 1781757 - 1781900
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcct 325  Q
     || | |||||| ||||||||||||||||||||| || ||||||    
T  1781857 gagggatttacataagaaattgcaaaaaatttgggccagagcct 1781900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 10839513 - 10839371
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  10839513 ttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattca 10839414  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     |||  |||||| |||||||||||||||||||||  |||||||    
T  10839413 gagaaatttacataagaaattgcaaaaaatttgggtcggagcc 10839371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 43347468 - 43347327
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||     
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcag 43347369  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||   |||||| |||||||||||||||||||||  |||||||    
T  43347368 aggaatttacataagaaattgcaaaaaatttgggtcggagcc 43347327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 20382514 - 20382655
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||| | |||||| ||||||||  ||||||||||| ||||||||    
T  20382614 tagggatttacataagaaatt-aaaaaaatttgggccggagcc 20382655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 19649506 - 19649363
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||| || ||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  281 atagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||| | |||||| |||||||| ||||||| |||  ||||||||    
T  19649406 atagcgatttacataagaaattacaaaaaagttgtgccggagcc 19649363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 36539627 - 36539769
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||| | |||||| ||||||||||| ||||||| | ||||||||    
T  36539727 tagggatttacataagaaattgcataaaatttaggccggagcc 36539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 188 - 310
Target Start/End: Original strand, 54546904 - 54547027
Alignment:
Q  188 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 286  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||      
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  287 gtttacacaagaaattgcaaaaaa 310  Q
     |||||  ||||||||||||||||    
T  54547004 atttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 193 - 315
Target Start/End: Complemental strand, 22845484 - 22845362
Alignment:
Q  193 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttac 292  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |      |||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttac 22845385  T
Q  293 acaagaaattgcaaaaaatttgg 315  Q
    | |||||||||||||||||||||    
T  22845384 ataagaaattgcaaaaaatttgg 22845362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 8926762 - 8926889
Alignment:
Q  185 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||| |||||||||     
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcag 8926861  T
Q  283 agaggtttacacaagaaattgcaaaaaa 310  Q
    ||   |||||| | ||||||||||||||    
T  8926862 aggaatttacatatgaaattgcaaaaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 33103739 - 33103866
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||  |||||||||||||| |||||||||||||| |     
T  33103739 ttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaatttaa 33103838  T
Q  283 agaggtttacacaagaaattgcaaaaaa 310  Q
     |   |||||| ||||||||||||||||    
T  33103839 gggaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 46685891 - 46685779
Alignment:
Q  207 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaa 306  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||  ||||||||||||||| |  | | |||||| |||||| |||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa-tgcaa 46685793  T
Q  307 aaaatttggcccgg 320  Q
    ||||||||| ||||    
T  46685792 aaaatttgggccgg 46685779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 47889731 - 47889823
Alignment:
Q  194 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 284  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatag 47889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 322
Target Start/End: Complemental strand, 6280491 - 6280352
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||     
T  6280491 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 6280392  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccggag 322  Q
     ||  |||||| ||||||||||| ||||||| | ||||||    
T  6280391 ggaaatttacataagaaattgcacaaaatttaggccggag 6280352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 317
Target Start/End: Original strand, 51336231 - 51336339
Alignment:
Q  209 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca-tagaggtttacacaagaaattgcaaa 307  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||||  ||||||||||| |||||||  |||  |||||| || ||||||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggaga-atttacataaaaaattgcaaa 51336329  T
Q  308 aaatttggcc 317  Q
    ||| ||||||    
T  51336330 aaaattggcc 51336339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 48206849 - 48206943
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaa 276  Q
    |||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| |||||| | ||||||||||| ||||||||||||    
T  48206849 ttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataagaa 48206943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 36826087 - 36825965
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| || ||||||| ||||||||||        |||| || ||||||| ||||||| |    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt--------tataagggtttatatgagaaattta 36825996  T
Q  282 tagaggtttacacaagaaattgcaaaaaatt 312  Q
     ||||||||||| ||||||||||||||||||    
T  36825995 aagaggtttacataagaaattgcaaaaaatt 36825965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 27642723 - 27642787
Alignment:
Q  250 cccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttg 314  Q
    ||||||||||| |||||||||||||||||||| |  | |||||| ||||||||||||||||||||    
T  27642723 cccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttg 27642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 19644458 - 19644327
Alignment:
Q  188 aacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaa-ttgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||  | |||||||||||||||| ||||||||  ||||||| |||| ||| |||  |||||||||  ||||||||||| |||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcata 19644359  T
Q  284 gaggtttacacaagaaattgcaaaaaatttgg 315  Q
    |   |||||| || ||||| ||||||| ||||    
T  19644358 gcaatttacataaaaaattacaaaaaaattgg 19644327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 791812 - 791906
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    |||||||||||| ||||| |  ||||||||||||| |||   |||||| ||||||| |||||||||| | ||||||||||| ||||||||||||||||    
T  791812 ttgcaacacattaataggtgtttacataagaaattacaa---aataatcaaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 39352219 - 39352321
Alignment:
Q  212 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaat 311  Q
    ||||||||||||||||||||     | |||||||||||   ||||||||| ||||||||||||||||| | |||  |||| | ||||||||||||||| |    
T  39352219 gaaattgcaagcaaataatattttttttaaagaaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgcaaaaatt 39352317  T
Q  312 ttgg 315  Q
    ||||    
T  39352318 ttgg 39352321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 14309929 - 14309794
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309929 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 14309830  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccg 319  Q
    | | ||||||||||||||||||||||||||||||||    
T  14309829 gggatttacacaagaaattgcaaaaaatttggcccg 14309794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 9232029 - 9231845
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9232029 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgt 9231930  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  9231929 aaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaaattggcccggagcc 9231845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 24694826 - 24694642
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694826 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 24694727  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24694726 aaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 24694642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 13627537 - 13627677
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  13627537 ttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcata 13627636  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  13627637 gggatttacacaagaaattgcaaaaaatttggcccggagcc 13627677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 1728035 - 1727923
Alignment:
Q  213 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatt 312  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatt 1727936  T
Q  313 tggcccggagcct 325  Q
    |||||||||||||    
T  1727935 tggcccggagcct 1727923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 28750783 - 28750641
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     |    |||||| |||||||||||||||| ||||||| |||||    
T  28750683 gaagaatttacataagaaattgcaaaaaaattggcccagagcc 28750641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 315
Target Start/End: Original strand, 27863695 - 27863828
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||     
T  27863695 ttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcag 27863794  T
Q  283 agaggtttacacaag-aaattgcaaaaaatttgg 315  Q
    |||  |||||| ||| |||||||||||| |||||    
T  27863795 agaaatttacataagaaaattgcaaaaagtttgg 27863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 13103246 - 13103119
Alignment:
Q  189 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 286  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||  | ||||||||||||||||| ||      
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  287 gtttacacaagaaattgcaaaaaatttg 314  Q
     |||||| || |||||||||||||||||    
T  13103146 atttacataaaaaattgcaaaaaatttg 13103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 34103703 - 34103808
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 304  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||| ||   |||||| || ||||| |    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacataataaattac 34103802  T
Q  305 aaaaaa 310  Q
    ||||||    
T  34103803 aaaaaa 34103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 11212689 - 11212765
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| || |||||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||||| || |||||||| | |||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 24497646 - 24497564
Alignment:
Q  243 gaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcct 325  Q
    ||||||||||||||||||||| ||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggagcct 24497564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 11084607 - 11084659
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084607 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 11084664 - 11084724
Alignment:
Q  261 gggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccgga 321  Q
    ||| ||||||||||||||||||||   ||||||||||||||||||||||| ||||| ||||    
T  11084664 ggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggctcgga 11084724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  239 taaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  187 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 248  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 48392579 - 48392397
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 241  Q
    |||||||||||||| |||||||||||| ||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392579 agtggcggagccaggaatattgtaaagtccgggcaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 48392480  T
Q  242 agaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  48392479 tgaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggctcggagcc 48392397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 49902465 - 49902605
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  49902465 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcata 49902564  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  49902565 gggatttacacaagaaattgcaaaaaatttggcccggagcc 49902605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 42517473 - 42517285
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517473 agtggcggagccaggaatattgtaaagcccgtgcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 42517374  T
Q  240 aaagaaattgcccaatttataggg----atttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||||||||||||||||||||||||     |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  42517373 aaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 42517285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 3346783 - 3346918
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  3346783 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 3346882  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccg 319  Q
    | | ||||||||| ||||||||||||||||||||||    
T  3346883 gggatttacacaacaaattgcaaaaaatttggcccg 3346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 187 - 324
Target Start/End: Original strand, 5974988 - 5975125
Alignment:
Q  187 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttaggg 5975087  T
Q  287 gtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     |||||||||||||||| ||||||||||||||||||||    
T  5975088 atttacacaagaaattgaaaaaaatttggcccggagcc 5975125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 7742954 - 7742770
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||| ||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742954 agtggcggagccaggaatattgtaaagtccgagcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 7742855  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||| || || |||||||    
T  7742854 aaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattgcaaaaaaatttgctcggagcc 7742770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 47022699 - 47022839
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||    
T  47022699 ttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcata 47022798  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  47022799 gagatttacacaagaaattgcaaaaaatttggcccggagcc 47022839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 10156191 - 10156007
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    ||||||||||||||||||||||||||||| | ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10156191 agtggcggagccagaaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatat 10156092  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||| |||||||||||   ||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  10156091 aaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcc 10156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 29149679 - 29149561
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  29149679 ttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattcata 29149580  T
Q  284 gaggtttacacaagaaatt 302  Q
    | | ||||||||| |||||    
T  29149579 gggatttacacaaaaaatt 29149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 302
Target Start/End: Original strand, 23908238 - 23908400
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  23908238 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaacat 23908337  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 302  Q
    |||||||||| ||||||||||||||||||||||||||||||||||   ||||||||| |||||    
T  23908338 aaagaaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 187 - 324
Target Start/End: Original strand, 38859849 - 38859988
Alignment:
Q  187 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 284  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  285 aggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
       |||||| ||||||||| ||||||||||| ||||||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcc 38859988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 10907781 - 10907639
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| |  |||||||||| |||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     ||   |||||| ||||||||||||||||||||| ||||||||    
T  10907681 gaggaatttacataagaaattgcaaaaaatttgggccggagcc 10907639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 205 - 325
Target Start/End: Original strand, 30745361 - 30745482
Alignment:
Q  205 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 303  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||  |||||| || ||||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30745460  T
Q  304 caaaaaatttggcccggagcct 325  Q
    ||||| ||||||  ||||||||    
T  30745461 caaaatatttgggtcggagcct 30745482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 205 - 325
Target Start/End: Original strand, 30766812 - 30766933
Alignment:
Q  205 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 303  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||  |||||| || ||||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30766911  T
Q  304 caaaaaatttggcccggagcct 325  Q
    ||||| ||||||  ||||||||    
T  30766912 caaaatatttgggtcggagcct 30766933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 5558334 - 5558431
Alignment:
Q  212 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 310  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||  | ||||||||| ||||||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcgga-aggtttacataagaaattgcaaaaaa 5558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 315
Target Start/End: Original strand, 42456566 - 42456700
Alignment:
Q  184 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    |||||||||||||||||||  |  ||||||||||||||||| | ||||||||   | | |||||||||||||||||||||||| ||||||||||||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattc 42456665  T
Q  281 atagaggtttacacaagaaattgcaaaaaatttgg 315  Q
    ||||   |||||| ||||||| |||||||||||||    
T  42456666 ataggaatttacataagaaatagcaaaaaatttgg 42456700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 26835333 - 26835461
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| ||||||  |||||||||||  |||||||||||||||||    
T  26835333 ttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattca 26835432  T
Q  282 tagaggtttacacaagaaattgcaaaaaa 310  Q
    ||    |||||| || |||||||||||||    
T  26835433 tatgaatttacataataaattgcaaaaaa 26835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 37189697 - 37189774
Alignment:
Q  244 aaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggag 322  Q
    |||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc-aaaaatttgggccggag 37189774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 324
Target Start/End: Complemental strand, 26511739 - 26511625
Alignment:
Q  209 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaa 308  Q
    |||||||||| ||| ||||||| |||||| ||||||||||   ||||||| ||| ||||||||||||||||||  | |||||||| ||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca-gggggtttacataagaaattgcaaaa 26511641  T
Q  309 aatttggcccggagcc 324  Q
    || || | ||||||||    
T  26511640 aaattaggccggagcc 26511625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 30252856 - 30252787
Alignment:
Q  205 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataa 273  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| | |||||||||||||||||||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataa 30252787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 13131914 - 13132017
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 304  Q
    |||||||||||||||||| | ||||  |||||  ||||||||||| ||||||||||| ||||||||||| ||||| | ||   |||||| |||||||| |    
T  13131914 tacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaaattac 13132013  T
Q  305 aaaa 308  Q
    ||||    
T  13132014 aaaa 13132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 14796871 - 14796998
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T
Q  282 tagaggtttacacaagaaattgcaaaaa 309  Q
     ||   |||||| || ||||||||||||    
T  14796971 gaggaatttacataaaaaattgcaaaaa 14796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 14805745 - 14805872
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T
Q  282 tagaggtttacacaagaaattgcaaaaa 309  Q
     ||   |||||| || ||||||||||||    
T  14805845 gaggaatttacataaaaaattgcaaaaa 14805872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 44107521 - 44107382
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||    ||||||||||| ||||||||| ||| |||    
T  44107521 ttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatca 44107422  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     ||   |||||| |||||   |||||||| |||| ||||||||    
T  44107421 gaggaatttacataagaa---gcaaaaaaattggaccggagcc 44107382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 45968685 - 45968761
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||| ||||||| |||||| || | |||||| |||||||||| |   |||||||| |||||||    
T  45968685 tacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattca 45968761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  206 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 248  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 9e-65; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 14942219 - 14942035
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14942219 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatgt 14942120  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  14942119 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 14942035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 144 - 324
Target Start/End: Original strand, 29846396 - 29846579
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnn---ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 240  Q
    |||||||||||| |||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846396 tggcggagccaggaatattgtaaagcccgagcgaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 29846495  T
Q  241 aagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  29846496 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 29846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 42769889 - 42769749
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42769889 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 42769790  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  42769789 gggatttacacaagaaattgcaaaaaatttggcccggagcc 42769749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 40277419 - 40277279
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40277419 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttata 40277320  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||| || |||||||||||||||||||||||||||    
T  40277319 gggatttacataaaaaattgcaaaaaatttggcccggagcc 40277279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 184 - 323
Target Start/End: Complemental strand, 14186569 - 14186430
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14186569 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcata 14186470  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagc 323  Q
    | | ||||||||||||||| ||||||||||||||||||||    
T  14186469 gggatttacacaagaaattacaaaaaatttggcccggagc 14186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 24145448 - 24145323
Alignment:
Q  15 gaaccataaaatcaaatttaagattttaaaacaaagtgaagttggagggaaaacataggatttgaaaaatttagggataaaatgtgacccacatattaaa 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24145448 gaaccacaaaatcaaatttaagattttaaaacaaagtgaagttggagggaaaacataggatttgaaaaatttagggataaaatgtgaccaacatattaaa 24145349  T
Q  115 aacatcacaattattatgattatgat 140  Q
    ||||||||||||||||||||||||||    
T  24145348 aacatcacaattattatgattatgat 24145323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 19181545 - 19181679
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19181545 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 19181644  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggccc 318  Q
    |   |||||||||||||||||||||||||||||||    
T  19181645 ggaatttacacaagaaattgcaaaaaatttggccc 19181679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 184 - 326
Target Start/End: Complemental strand, 6318592 - 6318446
Alignment:
Q  184 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  281 atagaggtttacacaagaaattg-caaaaaatttggcccggagccta 326  Q
    |||| | |||||| |||||||||  |||||| |||| ||||||||||    
T  6318492 atagggatttacataagaaattgaaaaaaaaattgggccggagccta 6318446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 3598039 - 3597903
Alignment:
Q  144 tggcggagccagaaatattgtaaagcccgagcnnnnnnnntt-gcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaa 242  Q
    |||||||||||||||||||||||||  |||||        || |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  3598039 tggcggagccagaaatattgtaaagttcgagcaaaaaaaatttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaa 3597940  T
Q  243 gaaattgcccaatttatagggatttatataagaaatt 279  Q
    ||||||| |||||||||||||||||| | ||||||||    
T  3597939 gaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 1387420 - 1387319
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    ||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||    
T  1387420 ttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattcat 1387321  T
Q  283 ag 284  Q
    ||    
T  1387320 ag 1387319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 14539837 - 14539704
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||| |  || ||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||    
T  14539837 ttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattca 14539738  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttgg 315  Q
     ||    ||||| |||||||||||||||||||||    
T  14539737 gaggaaattacataagaaattgcaaaaaatttgg 14539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 313
Target Start/End: Original strand, 33009667 - 33009799
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    ||||||||| |||||| |||  ||||||| ||||||||||||||||||||  ||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  33009667 ttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaattc 33009766  T
Q  281 atagaggtttacacaagaaattgcaaaaaattt 313  Q
    |||| | |||| | ||||||||| |||||||||    
T  33009767 atagggatttatataagaaattgtaaaaaattt 33009799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 41674840 - 41674716
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    |||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||||| || ||||||||| ||||||    
T  41674840 ttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattc 41674741  T
Q  281 atagaggtttacacaagaaattgca 305  Q
    | |||| |||||| |||||||||||    
T  41674740 agagagatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 43139766 - 43139882
Alignment:
Q  208 ataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgca 305  Q
    |||||||||||||||||||||||||||||  | |||||||||||| |||||||||||| ||||||||||||||| | ||    ||||| |||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaaattgca 43139865  T
Q  306 aaaaatttggcccggag 322  Q
    ||||| |||| ||||||    
T  43139866 aaaaaattggaccggag 43139882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 3956567 - 3956709
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| | |||||||||| |||||||| |||| ||||||||| |||||||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattca 3956666  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||| | |||||| || |||||| |||   ||||| ||||||||    
T  3956667 tagggatttacataaaaaattgaaaattttttgggccggagcc 3956709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 40780050 - 40780179
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg-atttatataagaaattc 280  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| |||||| | |||||||||||  ||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  281 atagaggtttacacaagaaattgcaaaaaa 310  Q
    | ||   |||||| |||||||| |||||||    
T  40780150 agaggaatttacataagaaattacaaaaaa 40780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 28321836 - 28321703
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || |||||||||||||||||| || ||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T
Q  282 -tagaggtttacacaagaaattgcaaaaaatttgg 315  Q
      |||  |||||| |||||||||||||||| ||||    
T  28321736 ggaga-atttacataagaaattgcaaaaaaattgg 28321703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| |||||| | |||||||| ||||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 2888058 - 2888164
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 303  Q
    |||||||||  |||| ||||| |||||||||| | |||| ||||||  |||||||||||  ||||||||| |||||||||||| |||||| ||||||||     
T  2888058 tacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaatta 2888157  T
Q  304 caaaaaa 310  Q
    |||||||    
T  2888158 caaaaaa 2888164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 3597917 - 3597881
Alignment:
Q  288 tttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  3597917 tttacacaagaaattgcaaaaaatttggcccggagcc 3597881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 32486239 - 32486320
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg 263  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| ||||||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggg 32486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  208 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    |||| |||||||||||||||||| ||||||  |||||||||| |||||||||||    |||||||||||||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 397
Target Start/End: Complemental strand, 24145332 - 24145301
Alignment:
Q  366 tgattatgattgtgatgtaagatgtatatgtt 397  Q
    ||||||||||||||||||||||||||||||||    
T  24145332 tgattatgattgtgatgtaagatgtatatgtt 24145301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 38397595 - 38397735
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38397595 ttgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 38397694  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  38397695 gggatttacacaagaaattgcaaaaaatttggcccggagcc 38397735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 6257541 - 6257401
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  6257541 ttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcata 6257442  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  6257441 gggatttacacaagaaattgcaaaaaatttggcccggagcc 6257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 37169164 - 37169024
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37169164 ttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 37169065  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | ||||||||| |||||||||||||||||||||||||||    
T  37169064 gggatttacacaaaaaattgcaaaaaatttggcccggagcc 37169024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 142 - 321
Target Start/End: Original strand, 23218438 - 23218619
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23218438 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatgt 23218537  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccgga 321  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  23218538 aaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaactttggcccgga 23218619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 16618701 - 16618561
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||  |||||||||||||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||| ||||||||||||||||||||    
T  16618601 gggatttacacaagaaattgtaaaaaatttggcccggagcc 16618561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 184 - 323
Target Start/End: Complemental strand, 39862618 - 39862479
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39862618 ttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcata 39862519  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagc 323  Q
    |   ||||||||||||||||||||||| ||||||||||||    
T  39862518 ggaatttacacaagaaattgcaaaaaaattggcccggagc 39862479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 187 - 324
Target Start/End: Original strand, 15631613 - 15631751
Alignment:
Q  187 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata-gggatttatataagaaattcataga 285  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||     
T  15631613 caacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagg 15631712  T
Q  286 ggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | |||| ||||||||||| ||||||||||||| ||||||    
T  15631713 gatttatacaagaaattgtaaaaaatttggcctggagcc 15631751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 8457096 - 8456954
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||| | |||||| ||||||||| ||||||||||| ||||||||    
T  8456996 tagggatttacataagaaattgaaaaaaatttgggccggagcc 8456954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 10081140 - 10081268
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||| |  |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  10081140 ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattca 10081239  T
Q  282 tagaggtttacacaagaaattgcaaaaaa 310  Q
    ||| | |||||| ||||||||| ||||||    
T  10081240 tagggatttacataagaaattgaaaaaaa 10081268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 184 - 322
Target Start/End: Complemental strand, 36769206 - 36769067
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| ||||||||||||| |||| |||| | |||||||||||||||||     
T  36769206 ttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattcag 36769107  T
Q  283 agaggtttacacaagaaattgcaaaaaatttggcccggag 322  Q
    ||   |||||| ||||||||||||||||||||| ||||||    
T  36769106 aggaatttacataagaaattgcaaaaaatttgggccggag 36769067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 310
Target Start/End: Complemental strand, 614522 - 614397
Alignment:
Q  187 caacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 284  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||| ||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  285 aggtttacacaagaaattgcaaaaaa 310  Q
       |||||| ||||||||||||||||    
T  614422 gaatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 11856290 - 11856432
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     || | |||||| |||||||| || |||| |||| ||| ||||    
T  11856390 gagcgatttacataagaaattacagaaaacttgggccgaagcc 11856432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 9738094 - 9737981
Alignment:
Q  205 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata--gaggtttacacaagaaat 301  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||  |||||| |||||||    
T  9738094 tacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaat 9737995  T
Q  302 tgcaaaaaatttgg 315  Q
    || |||||| ||||    
T  9737994 tgaaaaaaaattgg 9737981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 25560460 - 25560330
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||   ||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  282 tagaggtttacacaagaaattgcaaaaaatt 312  Q
    ||  | |||||| ||||||||| ||||||||    
T  25560360 taaggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 42119617 - 42119747
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||||||||| | ||||||||||| ||||||||||| | |||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T
Q  282 tagaggtttacacaagaaattgcaaaaaatt 312  Q
     ||   |||||| |||||||| |||||||||    
T  42119717 gaggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 313
Target Start/End: Original strand, 27916134 - 27916266
Alignment:
Q  184 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    ||||||||||||||||||  ||  | |||||||||||||| |||||||||||||| | ||| |||||||| |||||||||||  ||||||||||||||||    
T  27916134 ttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattc 27916233  T
Q  281 atagaggtttacacaagaaattgcaaaaaattt 313  Q
    | ||   |||||| |||||||||||||||||||    
T  27916234 agaggaatttacataagaaattgcaaaaaattt 27916266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 315
Target Start/End: Complemental strand, 29491521 - 29491414
Alignment:
Q  207 cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgca 305  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||| || ||||||||||||||||||  |||||| |||||||||||    
T  29491521 cataagaaattgcaagcaaataatcaaaaaatttaaagaa-ttgtccaatttataggggtt-atataagaaattcatagaaatttacataagaaattgca 29491424  T
Q  306 aaaaatttgg 315  Q
    ||| ||||||    
T  29491423 aaagatttgg 29491414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 33271377 - 33271263
Alignment:
Q  208 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaa 307  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||  |   |||||| ||||||||| |||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaaattgtaaa 33271278  T
Q  308 aaatttggcccggag 322  Q
    ||| |||| ||||||    
T  33271277 aaaattgggccggag 33271263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 6174762 - 6174874
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata--gggatttatataagaaattcatagaggtttacacaagaaatt 302  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||  ||| ||||||||||||||||| |    |||||  ||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaagaaatt 6174861  T
Q  303 gcaaaaaatttgg 315  Q
     ||||||||||||    
T  6174862 acaaaaaatttgg 6174874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 325
Target Start/End: Complemental strand, 3341230 - 3341110
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatat-aagaaattcatagaggtttacacaagaaattg 303  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| ||||||||||||||  |||||| || ||||||| |||  |||||| |||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattcagaga-atttacataagaaattg 3341132  T
Q  304 caaaaaatttggcccggagcct 325  Q
    |||||||||||| || ||||||    
T  3341131 caaaaaatttgggccagagcct 3341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 10115185 - 10115297
Alignment:
Q  213 aaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaat 311  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||||| ||| |||||||||||||| || ||   |||||| || |||||||||||||     
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaaaaa 10115284  T
Q  312 ttggcccggagcc 324  Q
    |||| ||||||||    
T  10115285 ttgggccggagcc 10115297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 29790328 - 29790219
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgc 304  Q
    |||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||  | |||||||||||||||||||    |||||| |||||||||     
T  29790328 tacataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattgt 29790230  T
Q  305 aaaaaatttgg 315  Q
    ||||| |||||    
T  29790229 aaaaattttgg 29790219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 10052606 - 10052491
Alignment:
Q  210 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaa 308  Q
    |||||||||||||||||||||  |||| | |||||||||| || |||||||||   |||||||||| | |||| || | |||||| ||||||||| ||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaa 10052507  T
Q  309 aatttggcccggagcc 324  Q
    || |||| ||||||||    
T  10052506 aaattgggccggagcc 10052491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  231 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    ||||||| ||||| ||||||||||||||||||  |||||||||||||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 33188451 - 33188403
Alignment:
Q  206 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaa 254  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgcccaa 33188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 22903252 - 22903329
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaata--ataaaaaatg-taaagaaattgcccaattt 257  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| |  ||||||||   |||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaaaagaataaaaaaaactaaagaaattgcccaattt 22903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 15475505 - 15475408
Alignment:
Q  205 tacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaat 301  Q
    ||||||||||||| | || |||||||| |||||| ||||||||||   |||||||||  ||||||||||| ||||| | |||  |||||| |||||||    
T  15475505 tacataagaaattacgagaaaataatacaaaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 1535768 - 1535908
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1535768 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 1535867  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  1535868 gggatttacacaagaaattgcaaaaaatttggcccggagcc 1535908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 49284354 - 49284494
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49284354 ttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 49284453  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  49284454 gggatttacacaagaaattgcaaaaaatttggcccggagcc 49284494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 324
Target Start/End: Original strand, 25954703 - 25954887
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25954703 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 25954802  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  25954803 aaagaaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccggagcc 25954887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 187 - 324
Target Start/End: Original strand, 34240993 - 34241130
Alignment:
Q  187 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  34240993 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataggg 34241092  T
Q  287 gtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
     | |||||||||||||||||||||||||||||||||||    
T  34241093 atctacacaagaaattgcaaaaaatttggcccggagcc 34241130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 37801439 - 37801255
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801439 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 37801340  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  37801339 aaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattgcaaaaaatttagcccggagcc 37801255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 142 - 302
Target Start/End: Original strand, 52632471 - 52632633
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    |||||||||||||| |||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52632471 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatgt 52632570  T
Q  240 aaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  52632571 aaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 36012316 - 36012176
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36012316 ttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 36012217  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | ||||||||| |||||||||||||||||||||| ||||    
T  36012216 gggatttacacaaaaaattgcaaaaaatttggcccgaagcc 36012176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 35018933 - 35019072
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 283  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||    
T  35018933 ttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatataagaaattcata 35019032  T
Q  284 gaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    | | |||||||||||||||| |||||||||||||| |||||    
T  35019033 g-gatttacacaagaaattgtaaaaaatttggcccagagcc 35019072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 46583669 - 46583554
Alignment:
Q  187 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 286  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  46583669 caacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcataggg 46583570  T
Q  287 gtttacacaagaaatt 302  Q
     ||||||||| |||||    
T  46583569 atttacacaaaaaatt 46583554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 16338318 - 16338207
Alignment:
Q  210 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 309  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||||| ||||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 16338219  T
Q  310 atttggcccgga 321  Q
    | ||||||||||    
T  16338218 aattggcccgga 16338207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 17888683 - 17888541
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||   |||||| ||||||||| ||||||||||| ||||||||    
T  17888583 taggaatttacataagaaattgaaaaaaatttgggccggagcc 17888541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 31377385 - 31377526
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |  ||||||||||||||||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattca 31377484  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||| | |||||| ||||||||| ||||||||||| ||||||||    
T  31377485 tagggatttacataagaaattg-aaaaaatttgggccggagcc 31377526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 16338419 - 16338309
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    ||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338419 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 16338320  T
Q  240 aaagaaattgc 250  Q
    |||||||||||    
T  16338319 aaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 20818584 - 20818695
Alignment:
Q  205 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 303  Q
    ||||||||||||||||| |||||||| ||||||| |||| |||||| ||||||||||||  |||||||||||||||||||| | |||||| |||||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttacaaaagaaattg 20818683  T
Q  304 caaaaaatttgg 315  Q
    ||||||||||||    
T  20818684 caaaaaatttgg 20818695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 54090176 - 54090307
Alignment:
Q  184 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 282  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| |  ||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  283 agaggtttacacaagaaattgcaaaaaatttg 314  Q
    || | |||||| ||| ||||||||||||||||    
T  54090276 agggatttacaaaaggaattgcaaaaaatttg 54090307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 323
Target Start/End: Original strand, 46473989 - 46474130
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||  ||||||||| || ||||||||| |||||||    
T  46473989 ttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattca 46474088  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttggcccggagc 323  Q
     ||   |||||| ||||||||||||||||||||| |||||||    
T  46474089 caggaatttacataagaaattgcaaaaaatttgggccggagc 46474130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 214 - 321
Target Start/End: Complemental strand, 10094495 - 10094387
Alignment:
Q  214 aattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatt 312  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||||||||||| ||||||||||||||||| |||  |||||| |||||||| |||||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatt 10094396  T
Q  313 tggcccgga 321  Q
    ||| |||||    
T  10094395 tgggccgga 10094387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 11054448 - 11054581
Alignment:
Q  184 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgcccaatttatagggatttatataagaaat 278  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| |||||||||||||||| | ||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  279 tcatagaggtttacacaagaaattgcaaaaaatt 312  Q
    |||||| | |||||| ||||||||||||||||||    
T  11054548 tcatagggatttacataagaaattgcaaaaaatt 11054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattc 280  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 12792364 - 12792231
Alignment:
Q  184 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  12792364 ttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattca 12792265  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttgg 315  Q
     |||  |||||| |||||||| ||||||| ||||    
T  12792264 gagaaatttacataagaaattacaaaaaaattgg 12792231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 47084056 - 47084149
Alignment:
Q  231 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||  |||||| ||||||||||||||||||| | ||||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaatttaggccggagcc 47084149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 9742661 - 9742538
Alignment:
Q  189 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagag 286  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| ||      
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  287 gtttacacaagaaattgcaaaaaa 310  Q
     |||||| ||||||||| ||||||    
T  9742561 atttacataagaaattgtaaaaaa 9742538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 36851446 - 36851378
Alignment:
Q  256 ttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaatttggcccggagcc 324  Q
    |||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 36851378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 50328791 - 50328919
Alignment:
Q  184 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    |||||||||||||||| |||  ||||||| ||||||||||  |||||||||||| | ||||||||||| ||||||||||| | ||||||||||||||| |    
T  50328791 ttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaa 50328890  T
Q  282 tagaggtttacacaagaaattgcaaaaaa 310  Q
     ||   |||||| ||||||||||||||||    
T  50328891 gaggaatttacaaaagaaattgcaaaaaa 50328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 35322837 - 35322704
Alignment:
Q  184 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 281  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| |||||||||||  |||||||||| | ||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  282 tagaggtttacacaagaaattgcaaaaaatttgg 315  Q
     |||  |||| | || ||||| ||||||| ||||    
T  35322737 gagaaatttatataaaaaattacaaaaaaattgg 35322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 19124849 - 19124729
Alignment:
Q  205 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 303  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||  ||||||| ||   ||||||||||||||||| ||   |||||| |||||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaattg 19124750  T
Q  304 caaaaaatttggcccggagcc 324  Q
    ||||||| || | ||||||||    
T  19124749 caaaaaaattaggccggagcc 19124729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  231 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 54542 - 54653
Alignment:
Q  210 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaa 309  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||||| ||||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 54641  T
Q  310 atttggcccgga 321  Q
    | ||||||||||    
T  54642 aattggcccgga 54653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 54441 - 54551
Alignment:
Q  142 agtggcggagccagaaatattgtaaagcccgagcnnnnnnnn--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 239  Q
    ||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54441 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 54540  T
Q  240 aaagaaattgc 250  Q
    |||||||||||    
T  54541 aaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 34563 - 34457
Alignment:
Q  205 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattg 303  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||  |||||| || | |||||| |||||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaattg 34464  T
Q  304 caaaaaa 310  Q
    |||||||    
T  34463 caaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 20915 - 20836
Alignment:
Q  231 aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagaggtttacacaagaaattgcaaaaaa 310  Q
    ||||||| |||| |||||| ||||||||||| | ||||||||||||||||| ||   |||||| ||||||||||||||||    
T  20915 aaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaa 20836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 85547 - 85592
Alignment:
Q  234 aaatgtaaagaaattgcccaatttatagggatttatataagaaatt 279  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University