View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_low_13 (Length: 493)
Name: NF1386_low_13
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 108 - 318
Target Start/End: Complemental strand, 52055458 - 52055248
Alignment:
| Q |
108 |
tattgatctctcctaattattattaaattagttatagactgcttaagtgtccgttccaataatacacaaaatcaattcattcaaagttttccttgcataa |
207 |
Q |
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| T |
52055458 |
tattgatctctcctaattattattaaattagttatagactgcttaagtgtccgttccaataatacacaaaatcaattcattcaaagttttccttgcataa |
52055359 |
T |
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| Q |
208 |
ggtaataaataaatagtttctcctaaacaaaacacacagtatttatctattgataataatacagtgctctttccttatgcatgtgttgtgcacgactgca |
307 |
Q |
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| T |
52055358 |
ggtaataaataaatagtttctcccaaacaaaacacacagtatttatctattgataatactacagtgctctttccttatgcatgtgttgtgcacgactgca |
52055259 |
T |
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| Q |
308 |
tataataataa |
318 |
Q |
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| T |
52055258 |
tataataataa |
52055248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 52055064 - 52054949
Alignment:
| Q |
310 |
taataataatctaaagaaccgtattctgaccagttaacctttcttttaaaacgaataataaaattcaaaacaaacgtcgagggtattgagggctagacta |
409 |
Q |
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| T |
52055064 |
taataataatctaaagaaccgtatactgaacaggtaacctttcttttaaaactaataataaaattcaaaacaaacatcgagggtattgagggctagacta |
52054965 |
T |
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| Q |
410 |
atcgttgccgtgaagc |
425 |
Q |
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| T |
52054964 |
atcgttgccgtgaagc |
52054949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 52055539 - 52055509
Alignment:
| Q |
16 |
atgaagatatctaacgttatgcatggtcctg |
46 |
Q |
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| T |
52055539 |
atgaagatatctaacgttatgcatggtcctg |
52055509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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