View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_low_17 (Length: 455)
Name: NF1386_low_17
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 70 - 450
Target Start/End: Complemental strand, 506414 - 506034
Alignment:
| Q |
70 |
gcaataccatagacaaatatgataaaccaattatcctaactaagttttatgtttgcatttgcagttcaataattgaacaatttgctagcacagtttccaa |
169 |
Q |
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| T |
506414 |
gcaataccatagacaaatgtggtaaaccaattatcctaactaacttttatgtttgcatttgcagttcaataattgaacaatttgctaccacagtttccaa |
506315 |
T |
|
| Q |
170 |
ccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatctttctttaaggagaattgcttgcccaacacatgttatcttagattg |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506314 |
ccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatctttctttaaggagaattgcttgcccaacacatgttatcttagattg |
506215 |
T |
|
| Q |
270 |
aacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatactgatagtgacttccttaccatattatatcaagatcaagttggag |
369 |
Q |
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| T |
506214 |
aacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatactgatagtgacttccttaccatattatatcaagatcaagttggag |
506115 |
T |
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| Q |
370 |
gtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccctgatgcacttataattaacattggagaattat |
450 |
Q |
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| T |
506114 |
gtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccctgatgcacttataattaacattggagacttat |
506034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 127 - 439
Target Start/End: Complemental strand, 16703181 - 16702869
Alignment:
| Q |
127 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
226 |
Q |
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| T |
16703181 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
16703082 |
T |
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| Q |
227 |
ctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatact |
326 |
Q |
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| T |
16703081 |
ttttaaggagaattgcttgcccaatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacact |
16702982 |
T |
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| Q |
327 |
gatagtgacttccttaccatattatatcaagatcaagttggaggtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccctgatgcac |
426 |
Q |
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| T |
16702981 |
gatagtgacttcctaactatattgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccaaatcctagtgctc |
16702882 |
T |
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| Q |
427 |
ttataattaacat |
439 |
Q |
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| T |
16702881 |
ttataatcaacat |
16702869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 127 - 439
Target Start/End: Complemental strand, 17677417 - 17677105
Alignment:
| Q |
127 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
226 |
Q |
| |
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||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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| T |
17677417 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
17677318 |
T |
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| Q |
227 |
ctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatact |
326 |
Q |
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| T |
17677317 |
ttttaaggagaattgcttgcccaatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacact |
17677218 |
T |
|
| Q |
327 |
gatagtgacttccttaccatattatatcaagatcaagttggaggtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccctgatgcac |
426 |
Q |
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|||||||||||||| || ||||| |||||||||||||| ||||| || |||||||||||||| |||||| | || ||||||||||| ||| ||| | |
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| T |
17677217 |
gatagtgacttcctaactatattgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccaaatcctagtgctc |
17677118 |
T |
|
| Q |
427 |
ttataattaacat |
439 |
Q |
| |
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||||||| ||||| |
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| T |
17677117 |
ttataatcaacat |
17677105 |
T |
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