View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_low_2 (Length: 790)

Name: NF1386_low_2
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_low_2
NF1386_low_2
[»] chr2 (4 HSPs)
chr2 (179-610)||(5995443-5995887)
chr2 (4-113)||(5995953-5996062)
chr2 (673-761)||(5995292-5995380)
chr2 (313-403)||(11510915-11511005)
[»] chr5 (1 HSPs)
chr5 (673-739)||(324510-324576)
[»] chr7 (2 HSPs)
chr7 (673-757)||(47455938-47456022)
chr7 (314-403)||(45369124-45369213)
[»] chr1 (2 HSPs)
chr1 (673-757)||(46111048-46111132)
chr1 (312-399)||(41516953-41517040)
[»] chr6 (2 HSPs)
chr6 (357-403)||(5724707-5724753)
chr6 (278-386)||(3524902-3525011)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 179 - 610
Target Start/End: Complemental strand, 5995887 - 5995443
Alignment:
Q  179 gtatgcttggttcagcagtcacaaaaattaattttgaataaattggttatatagaattggttttgactgaaagagagttatttatgattggaaatattga 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5995887 gtatgcttggttcagcagtcacaaaaattaattttgaataaattggttatatagaattggttttgactaaaagagagttatttatgattggaaatattga 5995788  T
Q  279 tgtaaaagtcagttgagcgataaagtcaaggtaaaaaatcaattctagagggaaaaactccacactctaacttcaggatagaatcaattttataggcaaa 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5995787 tgtaaaagtcagttgagcgataaagtcaaggtaaaaaatcaattctagagggaaaaactccacactctaacttcaggttagaatcaattttataggcaaa 5995688  T
Q  379 atcaattctacatgaaaacatccaagtccaagcatgtcaaaatcaatcctacaacttctagaatcaattatacatnnnnnnnnnngtaactaagtttatc 478  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          |||||||||||||||    
T  5995687 atcaattctacatgaaagcatccaagtccaagcatgtcaaaatcaattctacaacttctagaatcaattatacataaaaaaaaaagtaactaagtttatc 5995588  T
Q  479 aaacccatttggtttaaaagcttaacctgaatatattgatta--------------tgactaaaagtcaggtgatttacgtttggatatataaatattca 564  Q
    ||||||||||||||||||||||||||||||||| ||||||||              ||||||||||||||||||||||||||||||||||||||||||||    
T  5995587 aaacccatttggtttaaaagcttaacctgaataaattgattatgtataattgattttgactaaaagtcaggtgatttacgtttggatatataaatattca 5995488  T
Q  565 atgctaaatatcatttctacaatataaaaactccagattctagctt 610  Q
    ||  |||||||||||||||| || ||||||||| ||||| ||||||    
T  5995487 attttaaatatcatttctac-atgtaaaaactctagattatagctt 5995443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 5996062 - 5995953
Alignment:
Q  4 atctccaacaatatagcagaaaaaatgaaagcaacagtagaaagcttaaaagcacgtttagcagccaaaggaatccccatcttaaaattgtagaaaggag 103  Q
    |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5996062 atctccaataaaatagcagaaaaaatgaaagcaacagtggaaagcttaaaagcacgtttagcagccaaaggaatccccatcttaaaattgtagaaaggag 5995963  T
Q  104 gacgctgcac 113  Q
    ||||||||||    
T  5995962 gacgctgcac 5995953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 673 - 761
Target Start/End: Complemental strand, 5995380 - 5995292
Alignment:
Q  673 attgaaactttaagaaacccatttaactaaaaagcttaacctgaataatgggaaactccaaaacccaacgtcgtttgaaaacataatga 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5995380 attgaaactttaagaaacccatttaactaaaaagcttaacctgaataatgggaaactccaaaacccaacgtcgtttgaaaacataatga 5995292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 11511005 - 11510915
Alignment:
Q  313 aaaatcaattctagagggaaaaactccacactctaacttcaggatagaatcaattttataggcaaaatcaattctacatgaaaacatccaa 403  Q
    ||||| |||| |||||| |||||||||| | |||| ||||| ||||||||||| | |  ||||||||||||||||||  ||||||||||||    
T  11511005 aaaataaattgtagaggcaaaaactccaaattctagcttcaagatagaatcaaatatggaggcaaaatcaattctactcgaaaacatccaa 11510915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 673 - 739
Target Start/End: Original strand, 324510 - 324576
Alignment:
Q  673 attgaaactttaagaaacccatttaactaaaaagcttaacctgaataatgggaaactccaaaaccca 739  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  324510 attgaaactttaagaaacccatttgactaaaaagcttaacctgaataatgggaaactccaaaaccca 324576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 673 - 757
Target Start/End: Complemental strand, 47456022 - 47455938
Alignment:
Q  673 attgaaactttaagaaacccatttaactaaaaagcttaacctgaataatgggaaactccaaaacccaacgtcgtttgaaaacata 757  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||    
T  47456022 attgaaactttaacaaacccatttgactaaaaagcttaacctaaataatgggaaactccaaaacccatcatcgcttgaaaacata 47455938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 45369213 - 45369124
Alignment:
Q  314 aaatcaattctagagggaaaaactccacactctaacttcaggatagaatcaattttataggcaaaatcaattctacatgaaaacatccaa 403  Q
    ||||||||| |||||| |||| ||||  | |||| ||||| | || |||||||| || | |||||||||||||||| ||| |||||||||    
T  45369213 aaatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaa 45369124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 673 - 757
Target Start/End: Complemental strand, 46111132 - 46111048
Alignment:
Q  673 attgaaactttaagaaacccatttaactaaaaagcttaacctgaataatgggaaactccaaaacccaacgtcgtttgaaaacata 757  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||    
T  46111132 attgaaacattaagaaacccatttgactaaaaagcttaacccgaataatgggaaactccaaaacccatcatcgcttgaaaacata 46111048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 41517040 - 41516953
Alignment:
Q  312 aaaaatcaattctagagggaaaaactccacactctaacttcaggatagaatcaattttataggcaaaatcaattctacatgaaaacat 399  Q
    |||||||||||  ||||| |||||||||| | |||||||||| | |||||||||||||| | ||||||||||||||||  ||||||||    
T  41517040 aaaaatcaattgaagaggcaaaaactccaaattctaacttcaagttagaatcaattttaaacgcaaaatcaattctactcgaaaacat 41516953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 5724707 - 5724753
Alignment:
Q  357 tagaatcaattttataggcaaaatcaattctacatgaaaacatccaa 403  Q
    |||||||||||||  |||||||||||||||||| ||||| |||||||    
T  5724707 tagaatcaattttggaggcaaaatcaattctacctgaaagcatccaa 5724753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 3525011 - 3524902
Alignment:
Q  278 atgtaaaagtcagttgagcgataaagtcaaggtaaaaaatcaattctag-agggaaaaactccacactctaacttcaggatagaatcaattttataggca 376  Q
    ||||||||||||||||| ||||||| | ||||  ||||||| ||||||| ||  ||||||| || | |||| ||| | | |||||| |||| || |||||    
T  3525011 atgtaaaagtcagttgaacgataaattgaaggctaaaaatcgattctagaagccaaaaactacaaattctagcttaaagttagaattaattctaaaggca 3524912  T
Q  377 aaatcaattc 386  Q
    ||||||||||    
T  3524911 aaatcaattc 3524902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University