View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_low_24 (Length: 341)
Name: NF1386_low_24
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 74 - 338
Target Start/End: Complemental strand, 25222928 - 25222665
Alignment:
| Q |
74 |
aaaacacaatgagttataaatatattaaccaacctaaacattatacttacatcaacataattctaaatcatgtaagctacatgattagcgaatggtggca |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
25222928 |
aaaacacaatgagttataaatatattaaccaacctaaacattatacttacatcaacataattctaaatcatgtaagcaacatgat-agcgaatggtggca |
25222830 |
T |
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| Q |
174 |
atagagatagataatcaggtcccctgataaaggcatcaagtgatggtgggggtgtggtgcatgatgccgctcaggctgaacctcctcgtgatgctgctca |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25222829 |
atagagatagataatcaggtcccctgataaaggcatcaagtggtggtgggggtgtggtgcatgatgccactcaggctgaacctcctcgtgatgctgctca |
25222730 |
T |
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| Q |
274 |
gcctggtggtattcctcctagataggggcatggtagtgcaccttagtgagatcctatgctactcc |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |
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| T |
25222729 |
gcctggtggtattcctcctagataggggcatggtagtgcgccttagtgagatcctgtactactcc |
25222665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 25222988 - 25222941
Alignment:
| Q |
30 |
atttgaatgatgaagtaatgtaattacggcaaaataaacgatgaaaaa |
77 |
Q |
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| T |
25222988 |
atttgaatgataaagtaatgtaattgcggaaaaataaacgatgaaaaa |
25222941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 73 - 291
Target Start/End: Original strand, 8351415 - 8351633
Alignment:
| Q |
73 |
aaaaacacaatgagttataaatatattaaccaacctaaacattatacttacatcaacataattctaaatcatgtaagctacatgattagcgaatggtggc |
172 |
Q |
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| T |
8351415 |
aaaaacataatgagttagaaatatattaaccaaattaaacattatacttacatcaacataattctaaatcatgtaagcaacatgattagagaatggcggc |
8351514 |
T |
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| Q |
173 |
aatagagatagataatcaggtcccctgataaaggcatcaagtgatggtgggggtgtggtgcatgatgccgctcaggctgaacctcctcgtgatgctgctc |
272 |
Q |
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|||||||| || |||| ||||||| |||| |||||| || |||||||| || | ||| | || |||||||||||||||||||||||||||| ||| |
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| T |
8351515 |
aatagagacctatcatcatgtcccctagtaaaagcatcagttggtggtggggctgcgatgcgtcgtgtcgctcaggctgaacctcctcgtgatgcttctc |
8351614 |
T |
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| Q |
273 |
agcctggtggtattcctcc |
291 |
Q |
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|||||||| ||| |||||| |
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| T |
8351615 |
agcctggttgtactcctcc |
8351633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 34349804 - 34349851
Alignment:
| Q |
117 |
tacttacatcaacataattctaaatcatgtaagctacatgattagcga |
164 |
Q |
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||||||||||||| | |||| ||||||||||||| ||||||||||||| |
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| T |
34349804 |
tacttacatcaacgtcattccaaatcatgtaagcaacatgattagcga |
34349851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 13814714 - 13814770
Alignment:
| Q |
113 |
attatacttacatcaacataattctaaatcatgtaagctacatgattagcgaatggt |
169 |
Q |
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||||||||||| ||||||||||| ||||| ||||| | |||||||||| ||||||| |
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| T |
13814714 |
attatacttacttcaacataatttcaaatcttgtaaacaacatgattagtgaatggt |
13814770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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