View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_low_39 (Length: 265)
Name: NF1386_low_39
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 2019354 - 2019578
Alignment:
| Q |
13 |
aatattcaaattccc-ctcatattctctttcatatctatttctcaaagataacttgggtttcaattatatggatcattgattatttaattgatactggtg |
111 |
Q |
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| T |
2019354 |
aatattcagattccctctcatattctctttcatatctatttctcaaagataacttgggtttcaattatatggatcattgattatttaattgatactggtg |
2019453 |
T |
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| Q |
112 |
ttccttcttttcagactgattatctacgaacaatatctacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaa |
211 |
Q |
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| T |
2019454 |
ttccttcttttcagactgattatctacgaacaatatctacgaaaatgctaacaatggagattaaatctcaaaacaccatggccaacaatatgccatcaaa |
2019553 |
T |
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| Q |
212 |
tgaaggtggtcccaggaataatctg |
236 |
Q |
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| T |
2019554 |
tgaaggtggtcccaggaataatctg |
2019578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 2036138 - 2036307
Alignment:
| Q |
68 |
ggtttcaattatatggatcattgattatttaatt-gatactggtgttccttcttttcagactgattatctacgaacaatatctacgaaaatgctaacaat |
166 |
Q |
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| T |
2036138 |
ggtttctactatattgaacatcgattatttaactcgatactggtgttccttcttttcagtctgattatctacgaaaaatatctatgaaaatgctaacaat |
2036237 |
T |
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| Q |
167 |
ggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctg |
236 |
Q |
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| T |
2036238 |
ggagaataaatctcaaaacaccatggccaacaatatgctatcaaatgaaggtggtcccagcaataatctg |
2036307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 1990425 - 1990612
Alignment:
| Q |
50 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaa-ttgatactggtgttccttcttttcagactgattatctacgaacaatatc |
148 |
Q |
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| T |
1990425 |
tttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttccttcttttcagtctgattatttgcgaaaaatatc |
1990524 |
T |
|
| Q |
149 |
tacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctg |
236 |
Q |
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| T |
1990525 |
tttgaaaatggtaacaatggagaataaatctcaaaacaccatggccaacaatttgccatcaaatgaaggtggtcccagaaataatctg |
1990612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 2021999 - 2022136
Alignment:
| Q |
50 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaatt-gatactggtgttccttcttttcagactgattatctacgaacaatatc |
148 |
Q |
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| T |
2021999 |
tttctcaaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttcttttcagtctgattatctacgaaaaatatc |
2022098 |
T |
|
| Q |
149 |
tacgaaaatgctaacaatggatattaaatctcaaaaca |
186 |
Q |
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| T |
2022099 |
tacgaaaatgctaacaatggagaatagatctcaaaaca |
2022136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 48204741 - 48204659
Alignment:
| Q |
56 |
aaagataacttgggtttcaattatatggatcattgattatttaatt-gatactggtgttccttcttttcagactgattatcta |
137 |
Q |
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| T |
48204741 |
aaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttcttttcagtctgattatcta |
48204659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 48204664 - 48204621
Alignment:
| Q |
145 |
tatctacgaaaatgctaacaatggatattaaatctcaaaacacc |
188 |
Q |
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| T |
48204664 |
tatctatgaaaatgctaacaatggagaataaatctcaaaacacc |
48204621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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