View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_low_41 (Length: 254)
Name: NF1386_low_41
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 42189880 - 42190118
Alignment:
| Q |
12 |
aaaggttgtccttcatactccaaattaatggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatctgtcgatttagttaaa |
111 |
Q |
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| T |
42189880 |
aaaggttgtccttcatactccaaat----ggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatctgtcgatttagttaaa |
42189975 |
T |
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| Q |
112 |
ttttggcttaaatagttaaatctcaaatctgatgtagaaattatacttcaccatcaatcccaacaggtgaaattaaacttggatgcaagtggaggaacca |
211 |
Q |
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| T |
42189976 |
ttttggcttaaatagttaaatctcaaatctgatgtagaaattatacttcatcatcaatcccaataggtgaaattaaacttggatgcaagtggaagaacca |
42190075 |
T |
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| Q |
212 |
atataagcagcaatagaacccataatttcccctcaggttccaa |
254 |
Q |
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| T |
42190076 |
atataagcagcaatagaactcataatttcccctcaggttccaa |
42190118 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 19533409 - 19533328
Alignment:
| Q |
11 |
caaaggttgtccttcatactccaaattaatggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatct |
96 |
Q |
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| T |
19533409 |
caaaggtcgtccttcgtactccaaat----ggtcctttcacacaacaggtacgtacatacataaattatcgatccaatctgaatct |
19533328 |
T |
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