View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_low_42 (Length: 252)
Name: NF1386_low_42
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34667937 - 34668179
Alignment:
| Q |
1 |
ccatggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtcatcaagttcagagc |
100 |
Q |
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| T |
34667937 |
ccatggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtcatcaagttcagagc |
34668036 |
T |
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| Q |
101 |
cctaaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattcaaatacacacatattttgtaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34668037 |
cctaaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattcaaatacacacatattttgtaaca |
34668136 |
T |
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| Q |
201 |
gcatcctctgtccttgcttcccctgtactctgcagacctatga |
243 |
Q |
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| T |
34668137 |
gcatcctctgtccttgcttcccctgtactctgcagacctatga |
34668179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 26961740 - 26961979
Alignment:
| Q |
4 |
tggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtcatcaagttcagagccct |
103 |
Q |
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| T |
26961740 |
tggagaatttcaggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtcatcaagttcagagccct |
26961839 |
T |
|
| Q |
104 |
aaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattcaaatacacacatattttgtaacagca |
203 |
Q |
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| T |
26961840 |
aaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattcaaatacacacatattttgtaacagca |
26961939 |
T |
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| Q |
204 |
tcctctgtccttgcttcccctgtactctgcagacctatga |
243 |
Q |
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| T |
26961940 |
tcctctgtccttgcttcccctgtactctgcagacctatga |
26961979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 26850861 - 26851109
Alignment:
| Q |
5 |
ggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtcatcaagttcagagcccta |
104 |
Q |
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|||||| ||| ||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26850861 |
ggagaagttcaggcttttgtggcaatgggaaattgtcctcaacaaattttagtagcaactcacgaggtccagaaataaagtcatcaaattcagagcccta |
26850960 |
T |
|
| Q |
105 |
aacaaaataataaataa----------cacataatgcaactgaaacg-aggaaaaatgattttatgttaaatgaaaatagattcaaatacacacatattt |
193 |
Q |
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||||| ||||| ||| ||||||||||||||||| | | |||||| | |||| | |||| ||||| |||||||||||||| ||||| |
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| T |
26850961 |
cccaaaacaataagtaagtaaataaataacataatgcaactgaaatgcaagaaaaaag-ctttaaataaaattaaaatgaattcaaatacacacgtattt |
26851059 |
T |
|
| Q |
194 |
tgtaacagcatcctctgtccttgcttcccctgtactctgcagacctatga |
243 |
Q |
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| T |
26851060 |
tgaaacagcttcctctgtccttgcttcccccgtactctgcagacctatga |
26851109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 18465753 - 18465826
Alignment:
| Q |
30 |
cgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtcatcaagttcagagccct |
103 |
Q |
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|||| |||| ||||| |||||||| |||||||| || ||||||||||||| |||||||||||||||||| |||| |
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| T |
18465753 |
cgggtaattttcttccacaaatttaagcagcaattcccgaggtccagaaacaaagtcatcaagttcagaaccct |
18465826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 18465902 - 18465967
Alignment:
| Q |
178 |
aaatacacacatattttgtaacagcatcctctgtccttgcttcccctgtactctgcagacctatga |
243 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| |||| |
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| T |
18465902 |
aaatacacacatattttgtcacagcttcctctgtccttgcttcgccagtactctgaagaccaatga |
18465967 |
T |
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