View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1386_low_43 (Length: 248)
Name: NF1386_low_43
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 56316721 - 56316922
Alignment:
| Q |
19 |
gacatcatcataagtaaaattaaattgaaatgcaaacaaaataagattacatttacattttttctaaggcacgattacatttacatataannnnnnnnnn |
118 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
56316721 |
gacatcatcataattaaaatgaaattgaaatgcaaacaaaataagattacatttacattttttctatggcaagattacatttacatataatgtttttctt |
56316820 |
T |
|
| Q |
119 |
nnn--gactaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcc |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56316821 |
tttttgacaaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcc |
56316920 |
T |
|
| Q |
217 |
tc |
218 |
Q |
| |
|
|| |
|
|
| T |
56316921 |
tc |
56316922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University