View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386_low_7 (Length: 639)
Name: NF1386_low_7
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 3 - 610
Target Start/End: Original strand, 13975182 - 13975786
Alignment:
| Q |
3 |
aggagaagcaaagggtttggaatttgtgttaactaaagttcaaaaaagaaagagcgtgcgtcttttagatatcacttgaaagaaaaatccattaaaggga |
102 |
Q |
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| T |
13975182 |
aggagaagaaaagggtttggaatttgtgttaactaaagttcaaaaaagaaagagcgtgcgtcttttagatatcacttgaaagaaaaatccattaaaggga |
13975281 |
T |
|
| Q |
103 |
gattcaattaataaaaataaatagtaaataacatgaatgagtttcagtttataaatggccaaatgccctaaatttgggtttaattagcagtaccatccgg |
202 |
Q |
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| T |
13975282 |
gattcaattaataaaaataaatagtaaataacatgaatgagtttcagtttataaatggccaaatgccctaaatttgggtttaattagcagtacgatccgg |
13975381 |
T |
|
| Q |
203 |
gtattatctcttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacacacacaaaatggggtgggacatttaacgattccctcca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||| |
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| T |
13975382 |
gtattatctcttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacccacataaaatgggatgggacatgtaacgattccctcca |
13975481 |
T |
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| Q |
303 |
atnnnnnnntgaatatgtcaaagagagtgttcaaaaatgagtgttgcaagtatttgtcaagtttatatgatcaaaagttctctatgatggtccatgcaag |
402 |
Q |
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|| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13975482 |
ataaaaaagtga--atgttaaagagagtgttcaaaaatgagtgttgcatgtatttgtcaagtttatatgatcaaaaattctctatgatggtccatgcaag |
13975579 |
T |
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| Q |
403 |
gtagcatcattatcttattatttaaagatgacgtccaannnnnnnnnagagtgcacaaaagaatagaatagttgttgttagggttaaaattccaaagctc |
502 |
Q |
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| T |
13975580 |
gttgcatcattatcttattatttaaagatgacgtccaa-ttttttttagagtgcacaaaagaatagaatagttgttgttagggttaaaattcaaaagctc |
13975678 |
T |
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| Q |
503 |
cattcagaattatctaacaacattttcctgggaagagtggggaatactatcctccatgctaaccatactaaccatcggaaatcaattagggaatatggaa |
602 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13975679 |
cattcagaattatataacaacattttccttggaagagtggggaatactatcctccatgctaaccatactaaccatcggaaatcaattagggagtatggaa |
13975778 |
T |
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| Q |
603 |
aaactatc |
610 |
Q |
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|||||||| |
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| T |
13975779 |
aaactatc |
13975786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 10950223 - 10950186
Alignment:
| Q |
209 |
tctcttgttggtttaaatcattatgagtctatactttg |
246 |
Q |
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|||||| || |||||||||||||||||||||||||||| |
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| T |
10950223 |
tctcttattagtttaaatcattatgagtctatactttg |
10950186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 41727567 - 41727537
Alignment:
| Q |
209 |
tctcttgttggtttaaatcattatgagtcta |
239 |
Q |
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| T |
41727567 |
tctcttgttggtttaaatcattatgagtcta |
41727537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 55452065 - 55452097
Alignment:
| Q |
216 |
ttggtttaaatcattatgagtctatactttgga |
248 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
55452065 |
ttggtttaaatcattatgagtctacactttgga |
55452097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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