View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1386_low_9 (Length: 589)

Name: NF1386_low_9
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1386_low_9
NF1386_low_9
[»] chr1 (17 HSPs)
chr1 (115-561)||(16299292-16299738)
chr1 (153-271)||(25408060-25408179)
chr1 (135-374)||(23728716-23728964)
chr1 (153-271)||(4601495-4601614)
chr1 (115-258)||(14255051-14255195)
chr1 (168-262)||(12177366-12177460)
chr1 (150-266)||(26977701-26977818)
chr1 (157-262)||(22414743-22414849)
chr1 (166-233)||(21098891-21098958)
chr1 (169-262)||(1659806-1659899)
chr1 (198-262)||(5671780-5671844)
chr1 (198-258)||(34273097-34273157)
chr1 (167-235)||(3590806-3590874)
chr1 (155-262)||(16030361-16030469)
chr1 (155-262)||(16050360-16050468)
chr1 (198-262)||(33101524-33101588)
chr1 (198-262)||(52565590-52565654)
[»] chr7 (10 HSPs)
chr7 (143-452)||(13291941-13292260)
chr7 (170-273)||(34854225-34854328)
chr7 (153-374)||(16986988-16987219)
chr7 (213-262)||(39879412-39879461)
chr7 (196-271)||(5929019-5929094)
chr7 (169-271)||(5925483-5925585)
chr7 (213-262)||(10287613-10287662)
chr7 (158-262)||(21161211-21161315)
chr7 (213-262)||(9135378-9135427)
chr7 (166-262)||(7486523-7486619)
[»] chr5 (10 HSPs)
chr5 (213-456)||(22865786-22866038)
chr5 (213-298)||(24647313-24647405)
chr5 (281-431)||(24546442-24546594)
chr5 (153-269)||(25537369-25537486)
chr5 (172-242)||(26163619-26163689)
chr5 (213-262)||(22903118-22903167)
chr5 (150-262)||(27083255-27083367)
chr5 (155-254)||(8938876-8938978)
chr5 (198-242)||(26994643-26994687)
chr5 (275-380)||(31202265-31202372)
[»] chr6 (22 HSPs)
chr6 (169-431)||(34064176-34064446)
chr6 (198-374)||(31295431-31295616)
chr6 (135-273)||(12449589-12449728)
chr6 (198-315)||(9403182-9403306)
chr6 (213-315)||(27860905-27861014)
chr6 (198-298)||(19730565-19730672)
chr6 (153-273)||(23768157-23768278)
chr6 (220-298)||(19277050-19277135)
chr6 (153-273)||(22497304-22497425)
chr6 (178-262)||(689874-689958)
chr6 (215-266)||(3404875-3404926)
chr6 (166-261)||(34187277-34187372)
chr6 (213-262)||(10115702-10115751)
chr6 (213-273)||(16343604-16343664)
chr6 (158-240)||(30680961-30681044)
chr6 (196-262)||(14080492-14080557)
chr6 (213-262)||(15480358-15480407)
chr6 (213-262)||(19305489-19305538)
chr6 (165-262)||(33596838-33596935)
chr6 (202-242)||(4251081-4251121)
chr6 (167-235)||(14184587-14184655)
chr6 (198-262)||(17380107-17380171)
[»] scaffold0205 (2 HSPs)
scaffold0205 (135-273)||(10921-11060)
scaffold0205 (198-273)||(22896-22971)
[»] chr4 (10 HSPs)
chr4 (116-374)||(15742050-15742317)
chr4 (157-262)||(12683753-12683859)
chr4 (198-298)||(15514535-15514642)
chr4 (213-308)||(14601979-14602081)
chr4 (202-374)||(16012368-16012548)
chr4 (198-262)||(47253287-47253351)
chr4 (171-298)||(1638292-1638425)
chr4 (198-262)||(19809711-19809775)
chr4 (213-315)||(5518565-5518674)
chr4 (166-235)||(17110676-17110745)
[»] chr3 (13 HSPs)
chr3 (170-298)||(14860073-14860208)
chr3 (198-374)||(12516195-12516380)
chr3 (198-262)||(17143766-17143830)
chr3 (213-271)||(9781514-9781572)
chr3 (213-271)||(12252013-12252071)
chr3 (213-298)||(25495963-25496055)
chr3 (198-270)||(12731570-12731642)
chr3 (166-267)||(1770803-1770904)
chr3 (216-262)||(28715505-28715551)
chr3 (155-235)||(21649379-21649460)
chr3 (213-262)||(30606953-30607002)
chr3 (198-262)||(431333-431397)
chr3 (275-344)||(20622502-20622573)
[»] scaffold0002 (2 HSPs)
scaffold0002 (215-375)||(379743-379912)
scaffold0002 (198-273)||(121017-121092)
[»] chr8 (12 HSPs)
chr8 (183-266)||(21416733-21416816)
chr8 (188-262)||(30477641-30477715)
chr8 (154-273)||(24576589-24576709)
chr8 (167-297)||(4565368-4565505)
chr8 (203-258)||(13765004-13765059)
chr8 (213-262)||(6928107-6928156)
chr8 (213-258)||(13754783-13754828)
chr8 (200-241)||(17319657-17319698)
chr8 (166-262)||(24507435-24507531)
chr8 (213-262)||(26916915-26916964)
chr8 (214-262)||(17698302-17698350)
chr8 (198-258)||(24677608-24677668)
[»] scaffold0380 (1 HSPs)
scaffold0380 (213-366)||(6764-6926)
[»] scaffold0013 (1 HSPs)
scaffold0013 (170-298)||(4398-4533)
[»] chr2 (18 HSPs)
chr2 (156-315)||(19050392-19050559)
chr2 (155-262)||(45714961-45715069)
chr2 (170-374)||(15825136-15825349)
chr2 (213-380)||(18135896-18136072)
chr2 (213-374)||(15390481-15390651)
chr2 (275-376)||(10923059-10923162)
chr2 (150-298)||(29710979-29711133)
chr2 (166-262)||(12168950-12169047)
chr2 (169-242)||(20120328-20120401)
chr2 (198-267)||(18770324-18770393)
chr2 (135-258)||(29137847-29137971)
chr2 (157-262)||(36267466-36267572)
chr2 (198-262)||(3586373-3586437)
chr2 (167-223)||(28426178-28426234)
chr2 (155-262)||(45258169-45258277)
chr2 (198-262)||(12127680-12127744)
chr2 (198-262)||(24499799-24499863)
chr2 (275-303)||(36267592-36267620)
[»] scaffold0294 (1 HSPs)
scaffold0294 (198-262)||(260-324)
[»] scaffold0005 (1 HSPs)
scaffold0005 (213-308)||(215297-215399)
[»] scaffold0140 (1 HSPs)
scaffold0140 (171-262)||(6281-6372)
[»] scaffold0291 (2 HSPs)
scaffold0291 (153-262)||(8594-8703)
scaffold0291 (198-262)||(15447-15511)
[»] scaffold0360 (1 HSPs)
scaffold0360 (168-259)||(13902-13993)
[»] scaffold0101 (1 HSPs)
scaffold0101 (198-241)||(10756-10799)
[»] scaffold0092 (1 HSPs)
scaffold0092 (135-273)||(21624-21763)
[»] scaffold0023 (1 HSPs)
scaffold0023 (213-262)||(95827-95876)
[»] scaffold0074 (1 HSPs)
scaffold0074 (135-263)||(35199-35328)


Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 115 - 561
Target Start/End: Complemental strand, 16299738 - 16299292
Alignment:
Q  115 gagaatgcttcagtgttaccgtaacgacttccgacacagcggcgatgagtcttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttc 214  Q
    ||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  16299738 gagaatgctccggtgttaccgtaacgacttccgatacggcggcgatgagtcttgcggtggaacgaaacgtgtctgcatgcacattagcactccgacgttc 16299639  T
Q  215 aagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtacatgaagcaagttcacccttatatagacgtgtgttggccata 314  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16299638 aagtaagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtacatgaagcaagttcacccttatatagacgtgtgttggccata 16299539  T
Q  315 atcgtttaggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcctcgcgcgtagacgcgctcttgtgttgtacagtgcacacgag 414  Q
    |||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16299538 atcgtccgggttatgcggcgtgtaattagagacggagcaggacacaagtagggtgatcctcacgcgtagacgcgctcttgtgttgtacagtgcacacgag 16299439  T
Q  415 atggcgtacttccttaaatacagagtcttgaggcggtgaaagaccgaccaaactaaacctttcaatttgattttgtttaatttggttgaatttctaagtt 514  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16299438 atggcgtacttccttaaatacgaagtcttgaggcggtgaaagaccgaccaaactaaacctttcaatttgattttgattaatttggttgaatttctaagtt 16299339  T
Q  515 ggtcagtctaaaaacacttgacatttttactataagtaggtgttagt 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16299338 ggtcagtctaaaaacacttgacatttttactataagtaggtgttagt 16299292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 25408060 - 25408179
Alignment:
Q  153 gcggcgatgagtct-tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    ||||| |||||||| |||||||||| |||| |||  ||||  | | |||||||||| ||| ||||||||||||||||||||| | |||||| ||||||||    
T  25408060 gcggcaatgagtctctgcggtggaatgaaaggtgcctgcagacacgttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaag 25408159  T
Q  252 tgttgtgaaaaatgatgtgt 271  Q
    ||||||||||| ||||||||    
T  25408160 tgttgtgaaaagtgatgtgt 25408179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 374
Target Start/End: Complemental strand, 23728964 - 23728716
Alignment:
Q  135 gtaacgacttccgacacagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactga 233  Q
    |||| ||||||||||||  || ||||||||||| |||||| ||||||| |||  |||| || | |||||| |  || | |||||||| ||||| || |||    
T  23728964 gtaatgacttccgacacgacgacgatgagtcttcgcggtg-aacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatga 23728866  T
Q  234 gaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtgttggccataatcg--tttagg 324  Q
    ||||||||| ||||||||||||||||||| ||||||||||        |||| ||||||||||||||||||| ||   ||||||||||| ||  || |      
T  23728865 gaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacccttatataggcgcacgttggccataaccgtcttcaaa 23728766  T
Q  325 ttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcct 374  Q
    ||||||| | ||| ||||| ||| |||||||||||  |||||||||||||    
T  23728765 ttatgcggcatgtgattagggacagagcaggacacgtgtagggtgatcct 23728716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 4601614 - 4601495
Alignment:
Q  153 gcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    |||||||| |||||| |||||||||||||| |||  |||| || | |||||||||||| | ||||||||||||||||||||||||| | || |||| |||    
T  4601614 gcggcgataagtcttcgcggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagtaatgaaactgagaaataatgtgtaataag 4601515  T
Q  252 tgttgtgaaaaatgatgtgt 271  Q
    || |||||||  ||||||||    
T  4601514 tgctgtgaaatttgatgtgt 4601495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 14255195 - 14255051
Alignment:
Q  115 gagaatgcttcagtgttaccgtaacgacttccgacacagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgtt 213  Q
    ||||||||| | |||| || |||| | |||||| | | ||||||||||||||| | |||||||||||  |||  |||| || |  ||||||||| | | |    
T  14255195 gagaatgctccggtgtgacggtaatggcttccggcgcggcggcgatgagtcttcgtggtggaacgaagggtgcctgcaagcacgatagcactccaacgct 14255096  T
Q  214 caagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtg 258  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  14255095 caagtcattaatgaaactgagaaagagtgtgtaagaagtgttgtg 14255051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 12177366 - 12177460
Alignment:
Q  168 gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| |||  | ||||| | ||||||||||||   |||||||||||||| ||||||||||||||| |||  ||||||||||||||    
T  12177366 gcggtggaacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 12177460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 26977701 - 26977818
Alignment:
Q  150 acagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaag 248  Q
    ||||||| ||||| |||| |||||||||||||| |||  |||| || | |||||||||| | | |||||||||||||| ||| ||||||||||| |||      
T  26977701 acagcggtgatgaatctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtaga 26977800  T
Q  249 aagtgttgtgaaaaatga 266  Q
    |||| |||||||||||||    
T  26977801 aagtattgtgaaaaatga 26977818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 22414743 - 22414849
Alignment:
Q  157 cgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgtt 255  Q
    ||||||||||| |||||||||||||| |||   ||| || | ||||||||| || | ||||||||||||||||||||| ||| |||| |||  |||||||    
T  22414743 cgatgagtctttgcggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgtt 22414842  T
Q  256 gtgaaaa 262  Q
    |||||||    
T  22414843 gtgaaaa 22414849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 21098958 - 21098891
Alignment:
Q  166 ttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactga 233  Q
    |||||||||||||||| |||  |||| || |||||||||||||| | |||||||||||||| ||||||    
T  21098958 ttgcggtggaacgaaaggtggctgcaggcacattagcactccgacgatcaagtcagtaatggaactga 21098891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 1659899 - 1659806
Alignment:
Q  169 cggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||||||||| |||| | ||| | | ||| |||||| | | |||||||| ||||| | |||||||||| || |||||||||||||||||||    
T  1659899 cggtggaacgaaaggtgtctacatacacgttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaa 1659806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 5671780 - 5671844
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||| | | |||||| ||||||| ||||||||||||||| |||  ||||||||||||||    
T  5671780 ttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 5671844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 34273097 - 34273157
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtg 258  Q
    |||||||||| ||| |||||||||||| | ||||||||||||||| |||  ||||||||||    
T  34273097 ttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtg 34273157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 3590806 - 3590874
Alignment:
Q  167 tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgaga 235  Q
    |||| |||||||||| |||  |||| || | |||||||||||| | |||||||||||||| ||||||||    
T  3590806 tgcgatggaacgaaaggtgcatgcaggcaccttagcactccgacgatcaagtcagtaatggaactgaga 3590874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 16030361 - 16030469
Alignment:
Q  155 ggcgatgagtcttg-cggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtg 253  Q
    |||||||||||||  |||||||| |||| |||| |||| || | ||| || ||  ||| |||||||||||||| ||||||  ||||||| |||  |||||    
T  16030361 ggcgatgagtcttcacggtggaatgaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtg 16030460  T
Q  254 ttgtgaaaa 262  Q
    |||||||||    
T  16030461 ttgtgaaaa 16030469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 16050360 - 16050468
Alignment:
Q  155 ggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtg 253  Q
    ||||||||||||| ||||||||  |||| || | |||| || | |||||||||| | | |||||||| | ||| ||||||||||||||| |||  |||||    
T  16050360 ggcgatgagtcttcgcggtggatagaaaggtatctgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtg 16050459  T
Q  254 ttgtgaaaa 262  Q
    | |||||||    
T  16050460 tggtgaaaa 16050468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 33101588 - 33101524
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||| | | ||||||| |||||| |||||||||| |||| |||  ||||||||||||||    
T  33101588 ttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaa 33101524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 52565590 - 52565654
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||||| || | |||||||||||| | |||||| |||||||||| |  ||||||||||||||    
T  52565590 ttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaa 52565654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 143 - 452
Target Start/End: Complemental strand, 13292260 - 13291941
Alignment:
Q  143 ttccgacacagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagt 241  Q
    ||||| ||| ||||||||||||||| | ||||||| |||| |||| |||| |  | |||||||||  | | ||||||||||||||||||||| |||||||    
T  13292260 ttccggcacggcggcgatgagtcttcgtggtggaaggaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagt 13292161  T
Q  242 gcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtgttggccataatcgttt--aggttatgcga 332  Q
    | ||||||||||||||||||| ||||||||||        ||||||||||||||| |||||||| || | ||||||||||| ||| |   |||||||||     
T  13292160 gtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcaccattatataggcgcgcgttggccataaccgtctccgggttatgcgg 13292061  T
Q  333 cgtgtaattagagacggagcaggacacaagtagggtgatcctcgcgcgtagacgcgctcttgtgttgtacagtgcacacgagatggcgtacttccttaaa 432  Q
    |||||  |||| ||||||||| |||||  ||||||||||||| ||||| || ||||||| ||||| | || || ||| | || |||||| |||||||| |    
T  13292060 cgtgtggttagggacggagcatgacacgtgtagggtgatccttgcgcgaaggcgcgctcctgtgtggcacggttcacgcaagctggcgtgcttccttaga 13291961  T
Q  433 tacagagtcttgaggcggtg 452  Q
    | | ||| ||||||||||||    
T  13291960 tgcggagccttgaggcggtg 13291941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 34854225 - 34854328
Alignment:
Q  170 ggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgt 269  Q
    |||||||||||  |||||||||  | | ||||||||| || | |||||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||    
T  34854225 ggtggaacgaacggtgtttgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtgatgt 34854324  T
Q  270 gtac 273  Q
    ||||    
T  34854325 gtac 34854328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 153 - 374
Target Start/End: Complemental strand, 16987219 - 16986988
Alignment:
Q  153 gcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    ||||| ||||||||| |||||||||||||| |||  |||  || | ||||||||| ||   ||||| |||||||| || |||||||||||| ||||||||    
T  16987219 gcggcaatgagtcttcgcggtggaacgaaaggtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaaagagtgtgtaagaag 16987120  T
Q  252 tgttgtgaaaaatgatgtgt-------acatgaagcaagttcacccttatatagacgtgtgttggccataatcgttt--aggttatgcgacgtgtaatta 342  Q
    ||||||||||| ||||||||       |  |||||||||||||||||||||||| || | ||||||||||| ||| |   | |||||||  |||| ||||    
T  16987119 tgttgtgaaaagtgatgtgtcccttaaaggtgaagcaagttcacccttatataggcgcgcgttggccataaccgtctccggattatgcggtgtgtgatta 16987020  T
Q  343 gagacggagcaggacacaagtagggtgatcct 374  Q
    | || ||||||||||||  | |||||||||||    
T  16987019 gggatggagcaggacacgtgcagggtgatcct 16986988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 39879412 - 39879461
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  39879412 tcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaa 39879461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 5929094 - 5929019
Alignment:
Q  196 cattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgt 271  Q
    |||||||||||| |   |||||||||||||| |||||| | |||| | ||||||||||||||||||| ||||||||    
T  5929094 cattagcactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatgtgt 5929019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 5925585 - 5925483
Alignment:
Q  169 cggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatg 268  Q
    ||||||||||||| |||| |||| || | |||||||||| | | |||||||||||||| |||||||| |||  |  |||||||||| ||||||| || ||    
T  5925585 cggtggaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgtcgtgaaaagtgttg 5925486  T
Q  269 tgt 271  Q
    |||    
T  5925485 tgt 5925483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 10287662 - 10287613
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| | |||||||| |||| |||||||||||||||||||    
T  10287662 tcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaa 10287613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 21161211 - 21161315
Alignment:
Q  158 gatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttg 256  Q
    |||||||||| |||||||||||||| |||| |||| || | |||||||||| | | |||||||||||||| | || |||||| ||| |||  ||||||||    
T  21161211 gatgagtcttcgcggtggaacgaaa-gtgtctgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttg 21161309  T
Q  257 tgaaaa 262  Q
    ||||||    
T  21161310 tgaaaa 21161315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 9135427 - 9135378
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| || |||||||||||| |||| || |||||||||||    
T  9135427 tcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaa 9135378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 7486523 - 7486619
Alignment:
Q  166 ttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||||||| |||| |||  |||| || | |||||||||| | | |||| ||||||||| |||||||||||| || |||  | ||||||||||||    
T  7486523 ttgcggtggaatgaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaa 7486619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 213 - 456
Target Start/End: Original strand, 22865786 - 22866038
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtacat-------gaagcaagttcacccttatatagacgtgtg 305  Q
    |||||| ||||||| |||||||||| |||| ||||||| ||||||||||| |||||||||| |       ||||||||||||||||||||||| |||| |    
T  22865786 tcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgtgcg 22865885  T
Q  306 ttggccataatcgtttagg--ttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcctcgcgcgtagacgcgctcttgtgttgtaca 403  Q
    |||||||||| |||||  |  ||||||||| ||| ||||| ||||||||| |||||  ||||||||||||| ||||| || ||| ||||| ||| | | |    
T  22865886 ttggccataaccgtttccggattatgcgacttgtgattagggacggagcatgacacgtgtagggtgatccttgcgcgaaggcgcactcttatgtggaata 22865985  T
Q  404 gtgcacacgagatggcgtacttccttaaatacagagtcttgaggcggtgaaag 456  Q
    |||||| | || |||||| || |||||| | | ||||||||||||||||||||    
T  22865986 gtgcacgcaagctggcgtgctcccttaagtgcggagtcttgaggcggtgaaag 22866038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 24647313 - 24647405
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatag 298  Q
    |||| ||||||||| |||||| |||||||| ||||||||||||||||||| |||||| |||        ||||||||||||||||||||||||    
T  24647313 tcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtataccttaagggtgaagcaagttcacccttatatag 24647405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 281 - 431
Target Start/End: Original strand, 24546442 - 24546594
Alignment:
Q  281 aagttcacccttatatagacgtgtgttggccataatcgttta--ggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcctcgcg 378  Q
    |||||||||||||||||| || | ||| ||||||| ||| |   ||||||||| ||||| ||||| ||||||||| |||||  ||||||||||||| |||    
T  24546442 aagttcacccttatataggcgcgcgttagccataaccgtctccgggttatgcggcgtgtgattagggacggagcaagacacgtgtagggtgatccttgcg 24546541  T
Q  379 cgtagacgcgctcttgtgttgtacagtgcacacgagatggcgtacttccttaa 431  Q
    || ||  |||||| ||||| | || |||||| | || |||||| || ||||||    
T  24546542 cggaggtgcgctcctgtgtggcacggtgcacgcaagttggcgtgctcccttaa 24546594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 25537369 - 25537486
Alignment:
Q  153 gcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    ||||||| ||||||| |||||||||||||| |||  |||| || | |||||||||| | | |||||   |||||| |||||||||||| || ||| ||||    
T  25537369 gcggcgaagagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaag 25537468  T
Q  252 tgttgtgaaaaatgatgt 269  Q
    ||||||||||| ||||||    
T  25537469 tgttgtgaaaagtgatgt 25537486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 26163619 - 26163689
Alignment:
Q  172 tggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtg 242  Q
    |||||||||| |||  ||||||| |||||||||||| | | ||||||||| ||||||||| ||||||||||    
T  26163619 tggaacgaaaggtgcatgcatgcacattagcactccaacgctcaagtcagaaatgaaactaagaaagagtg 26163689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 22903118 - 22903167
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| ||||||||||||||| |||  ||||||||||||||    
T  22903118 tcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 22903167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 27083367 - 27083255
Alignment:
Q  150 acagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaag 248  Q
    |||| ||||| ||||||| ||||| |||||||| |||| ||||  | | |||||||||| |   |||||||||||| ||||||| ||||||||| |||      
T  27083367 acagtggcgaagagtcttcgcggtagaacgaaatgtgtctgcagacacgttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtaga 27083269  T
Q  249 aagtgttgtgaaaa 262  Q
    ||||||||||||||    
T  27083268 aagtgttgtgaaaa 27083255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 8938876 - 8938978
Alignment:
Q  155 ggcgatgagtctt---gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    |||||||||||||   ||||| |||||||| |||  |||| || | ||| |||||| ||| || |||||||| || ||||||||||||||| |||| |||    
T  8938876 ggcgatgagtctttgtgcggtagaacgaaaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaactgagaaagagtgtgtaaaaag 8938975  T
Q  252 tgt 254  Q
    |||    
T  8938976 tgt 8938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 26994687 - 26994643
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtg 242  Q
    |||||||||||| | |||||||||||||| || ||||||||||||    
T  26994687 ttagcactccgacgctcaagtcagtaatggaattgagaaagagtg 26994643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 31202372 - 31202265
Alignment:
Q  275 tgaagcaagttcacccttatatagacgtgtgttggccataatcg--tttaggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatc 372  Q
    |||||||||||||||||||||||| ||   ||||| ||||| ||  | ||||||||||| ||||| ||||| |  |||| | |||||  ||||||| |||    
T  31202372 tgaagcaagttcacccttatataggcgcacgttggtcataaccgtctctaggttatgcggcgtgtgattaggggtggaggaagacacgtgtagggtaatc 31202273  T
Q  373 ctcgcgcg 380  Q
    ||||||||    
T  31202272 ctcgcgcg 31202265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 169 - 431
Target Start/End: Original strand, 34064176 - 34064446
Alignment:
Q  169 cggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatg 268  Q
    |||| |||||||| |||| |||| || | ||| ||||  || ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  34064176 cggtagaacgaaaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatg 34064275  T
Q  269 tgtac-------atgaagcaagttcacccttatatagacgtgtgttggccataatcgt--ttaggttatgcgacgtgtaattagagacggagcaggacac 359  Q
    |||||        |||||||||||||||||||||||| || | ||||||||||| |||     ||||||||| |  || ||||| | || || |||||||    
T  34064276 tgtaccttgagggtgaagcaagttcacccttatataggcgcgagttggccataaccgtcaccgggttatgcggcacgtgattaggggcgaagtaggacac 34064375  T
Q  360 aagtagggtgatcctcgcgcgtagacgcgctcttgtgttgtacagtgcacacgagatggcgtacttccttaa 431  Q
    | ||| ||||||||| ||||| || ||||||| ||||| |||| ||| || | ||||||||| |||||||||    
T  34064376 atgtatggtgatccttgcgcgaaggcgcgctcctgtgtggtac-gtgtacgcaagatggcgtgcttccttaa 34064446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 198 - 374
Target Start/End: Complemental strand, 31295616 - 31295431
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcaccc 290  Q
    |||||||| ||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||        ||||||||||||||||    
T  31295616 ttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtgatatgtacctcgagggtgaagcaagttcaccc 31295517  T
Q  291 ttatatagacgtgtgttggccataatcg--tttaggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcct 374  Q
    ||| |||| || | ||||||||||| ||  ||  ||||||||  ||||| |||||  |||||||| |||||  |||||||||||||    
T  31295516 ttacataggcgggggttggccataaccgtcttcgggttatgcttcgtgtgattaggaacggagcaagacacgtgtagggtgatcct 31295431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 12449728 - 12449589
Alignment:
Q  135 gtaacgacttccgacacagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactga 233  Q
    |||||||||| || ||| |||| |||||||||| | ||||| |||||| |||| || | || | ||||||||| || | |||||||||||||| | ||||    
T  12449728 gtaacgactttcggcaccgcggtgatgagtcttcgtggtgggacgaaaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctga 12449629  T
Q  234 gaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac 273  Q
     |||||||| ||||||||||||||| ||| ||||||||||    
T  12449628 aaaagagtgtgtaagaagtgttgtggaaagtgatgtgtac 12449589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 9403182 - 9403306
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcaccc 290  Q
    |||| ||||||| | |||||||| ||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||        ||||||||||||||||    
T  9403182 ttagaactccgacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaagcaagttcaccc 9403281  T
Q  291 ttatatagacgtgtgttggccataa 315  Q
    ||||||||  | | |||||||||||    
T  9403282 ttatataggtgcgcgttggccataa 9403306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 27861014 - 27860905
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtg 305  Q
    |||||||||||||| |||||| | |||| | ||||||||||||||||||| ||||||||||        |||||||||||||||||| ||||| || |||    
T  27861014 tcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatgtgtactttgagggtgaagcaagttcacccttttataggcgcgtg 27860915  T
Q  306 ttggccataa 315  Q
    ||||||||||    
T  27860914 ttggccataa 27860905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 19730672 - 19730565
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcaccc 290  Q
    |||||||||| | | |||||||| ||||| ||||||||||||||| ||||||||||| ||| ||| ||||||||||        ||||||||||||||||    
T  19730672 ttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgtcgtgtaaagtgatgtgtaccttgagggtgaagcaagttcaccc 19730573  T
Q  291 ttatatag 298  Q
    ||||||||    
T  19730572 ttatatag 19730565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 23768157 - 23768278
Alignment:
Q  153 gcggcgatgagtcttgcg-gtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    |||||||||||||||  | ||||||||||  |||||| || ||  ||||||||||| ||| |||||||||||||  |||||| | | |||| ||||||||    
T  23768157 gcggcgatgagtcttcggcgtggaacgaagggtgtttacaggcatattagcactccaatgctcaagtcagtaattgaactgaaagatagtgtgtaagaag 23768256  T
Q  252 tgttgtgaaaaatgatgtgtac 273  Q
    ||||||| ||| ||||||||||    
T  23768257 tgttgtggaaagtgatgtgtac 23768278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 19277135 - 19277050
Alignment:
Q  220 agtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatag 298  Q
    ||||||| || |||||||||||| ||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||    
T  19277135 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 19277050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 22497425 - 22497304
Alignment:
Q  153 gcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    ||||||||||||||| ||| |||||||||| ||| |||||  | | |||||||||||| | |||||||||||||| ||| || | |||| |  ||| |||    
T  22497425 gcggcgatgagtcttcgcgatggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaag 22497326  T
Q  252 tgttgtgaaaaatgatgtgtac 273  Q
    ||||||||||| || |||||||    
T  22497325 tgttgtgaaaagtgttgtgtac 22497304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 689958 - 689874
Alignment:
Q  178 gaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||| ||||||||| |  |||||||||| | ||| |||||||||||||| ||||||||||| ||| |||  ||||||||||||||    
T  689958 gaaaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaa 689874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 3404926 - 3404875
Alignment:
Q  215 aagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatga 266  Q
    |||||||||||| ||||||||||||||| |||  ||||||||||||||||||    
T  3404926 aagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatga 3404875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 34187277 - 34187372
Alignment:
Q  166 ttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaa 261  Q
    |||||||||||||||| |||| ||||  | | ||||||| || |   |||||||||||||| ||||||||||||||| |||| |||||| ||||||    
T  34187277 ttgcggtggaacgaaaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtgaaa 34187372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 10115751 - 10115702
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||||||||||||||||| | |||| |||| |||||||||    
T  10115751 tcaagtcagtaatgaaactgagaaagagcgagtaaaaagttttgtgaaaa 10115702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 16343604 - 16343664
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac 273  Q
    |||||||||||||| |||||||| |||  | ||||||||||||||| ||| ||||||||||    
T  16343604 tcaagtcagtaatggaactgagagagaaagtgtaagaagtgttgtggaaagtgatgtgtac 16343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 30680961 - 30681044
Alignment:
Q  158 gatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagag 240  Q
    |||||||||| ||||||| |||||| |||| ||||  | | |||||||||| | | ||||||||||||||||||||| ||||||    
T  30680961 gatgagtcttcgcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagag 30681044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 14080492 - 14080557
Alignment:
Q  196 cattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||||||| || | |||||| ||||||||| ||||||||||||| |||  ||||||||||||||    
T  14080492 cattagcactctgacgctcaagttagtaatgaa-ctgagaaagagtgtgtagtaagtgttgtgaaaa 14080557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 15480407 - 15480358
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||| |||||||||||||||| |||| |||  ||||||||||||||    
T  15480407 tcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaa 15480358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 19305489 - 19305538
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| ||||||| ||||||| |||  ||||||||||||||    
T  19305489 tcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaa 19305538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 33596838 - 33596935
Alignment:
Q  165 cttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||||||||||||| ||   |||| || ||||| |||||  | | |||| |||||||||||||| ||||| |||| |||  ||||||||||||||    
T  33596838 cttgcggtggaacgaaaggtacctgcaggcacattaacactctaacgctcaactcagtaatgaaactaagaaaaagtgtgtagaaagtgttgtgaaaa 33596935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 4251121 - 4251081
Alignment:
Q  202 cactccgatgttcaagtcagtaatgaaactgagaaagagtg 242  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  4251121 cactccaacgttcaagtcagtaatgaaaatgagaaagagtg 4251081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 14184655 - 14184587
Alignment:
Q  167 tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgaga 235  Q
    ||||||||||||||| ||| ||||| || |||||||||||||| | |||||| |||  ||||| |||||    
T  14184655 tgcggtggaacgaaaggtgattgcaggcacattagcactccgacgatcaagtgagttttgaaattgaga 14184587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 17380107 - 17380171
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||| ||||| |||| ||||||||||||  ||||||||||||||| | |  ||||||||||||||    
T  17380107 ttagtactccaatgtccaagtcagtaatagaactgagaaagagtgtgaataaagtgttgtgaaaa 17380171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 11060 - 10921
Alignment:
Q  135 gtaacgacttccgacacagcggcgatgagtct-tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactga 233  Q
    |||||||||||||  || |||||||||| ||| ||||||||||| ||| |||| |||| || | |||||||||| | | |||||||| ||||| ||||||    
T  11060 gtaacgacttccggtacggcggcgatgaatctctgcggtggaacaaaaggtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaactga 10961  T
Q  234 gaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac 273  Q
     | |||||| ||||||||||||||||||| ||||||||||    
T  10960 aagagagtgtgtaagaagtgttgtgaaaagtgatgtgtac 10921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 22896 - 22971
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac 273  Q
    ||||||||| || | |||||||||||||| ||||||||||  ||| ||||||||||||||||||| ||| ||||||    
T  22896 ttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtgacgtgtac 22971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 116 - 374
Target Start/End: Complemental strand, 15742317 - 15742050
Alignment:
Q  116 agaatgcttcagtgttaccgtaacgacttccgacacagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttc 214  Q
    |||||||| | |||| || ||||||  ||| ||||| ||| ||||||||||| | |||||| ||||| |||  |||  || | |||||||||  | | ||    
T  15742317 agaatgctccggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtggagcgaaaggtgcctgctggcacgttagcactcttacgctc 15742218  T
Q  215 aagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtgtt 307  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||        |||||||| ||||||||||||||| || |||||    
T  15742217 aagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagactgaagcaaattcacccttatataggcgcgtgtt 15742118  T
Q  308 ggccataatcgttt--aggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcct 374  Q
    |||||||| ||| |   ||||||||| ||||| ||||  ||| ||||| |||||  |||||||||||||    
T  15742117 ggccataaccgtctccgggttatgcggcgtgtgattaaggac-gagcaagacacgtgtagggtgatcct 15742050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 12683753 - 12683859
Alignment:
Q  157 cgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgtt 255  Q
    ||||||||||| |||||||||||||| |||  |||| || | |||||||||| | | |||||| ||||||||||||||||||||||| |||  |||||||    
T  12683753 cgatgagtctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgtt 12683852  T
Q  256 gtgaaaa 262  Q
    |||||||    
T  12683853 gtgaaaa 12683859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 15514642 - 15514535
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcaccc 290  Q
    |||||||||| | | |||||||||||||| |||||| |||||||| ||||||||||||||| ||| ||||||||||        ||||||||||||||||    
T  15514642 ttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaagcaagttcaccc 15514543  T
Q  291 ttatatag 298  Q
    ||||||||    
T  15514542 ttatatag 15514535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 14602081 - 14601979
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtg 305  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||| || |||||||        ||||||||||||| |||||||||| ||||||    
T  14602081 tcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcatccttatatagccgtgtg 14601982  T
Q  306 ttg 308  Q
    |||    
T  14601981 ttg 14601979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 202 - 374
Target Start/End: Complemental strand, 16012548 - 16012368
Alignment:
Q  202 cactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgt------acatgaagcaagttcacccttata 295  Q
    |||||||| | |||||||||||||| |||||||| |||||| ||||||||  |||||| || |||| |||      |  |||||||||||||||||||||    
T  16012548 cactccgacgctcaagtcagtaatggaactgagatagagtgtgtaagaagcattgtgagaagtgatatgtatcttgaggtgaagcaagttcacccttata 16012449  T
Q  296 tagacgtgtgttggccataatcgttt--aggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcct 374  Q
    ||| || | |||||  |||||||| |    |||||||| ||||| ||||| |||||||||| ||||  |||||||||||||    
T  16012448 taggcgcgcgttggtaataatcgtatccgagttatgcggcgtgtgattagtgacggagcagaacacgtgtagggtgatcct 16012368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 47253287 - 47253351
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||| | | |||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  47253287 ttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaa 47253351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 1638425 - 1638292
Alignment:
Q  171 gtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtg 270  Q
    ||||||||||| ||||||||| || | |||||||||||| | |||||||||||||| |||||||| |||  |  |||||||||||  ||||| || ||||    
T  1638425 gtggaacgaaaggtgtttgca-gcactttagcactccgacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgttaagaaaagtgttgtg 1638327  T
Q  271 tac-------atgaagcaagttcacccttatatag 298  Q
    |||        ||||||||||||||||||||||||    
T  1638326 taccttgagggtgaagcaagttcacccttatatag 1638292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 19809711 - 19809775
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||| | | ||||||||||||||||||| |||||||||| |||  ||||||||||||||    
T  19809711 ttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaa 19809775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 5518565 - 5518674
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtg 305  Q
    |||||||||||||  |||||||| ||| || ||||||||||||||| ||| ||||| ||||        |||||||||||||||||||||||| || |||    
T  5518565 tcaagtcagtaattgaactgagagagaatgtgtaagaagtgttgtggaaagtgatgcgtaccttgagggtgaagcaagttcacccttatataggcgcgtg 5518664  T
Q  306 ttggccataa 315  Q
    |||| |||||    
T  5518665 ttgggcataa 5518674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 17110676 - 17110745
Alignment:
Q  166 ttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgaga 235  Q
    |||||||||||||||| |||  |||| || | |||||||||||| | |||||||||||||| || |||||    
T  17110676 ttgcggtggaacgaaatgtgcctgcaagcacgttagcactccgacgatcaagtcagtaatggaattgaga 17110745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 170 - 298
Target Start/End: Complemental strand, 14860208 - 14860073
Alignment:
Q  170 ggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgt 269  Q
    |||||||||||| ||| ||||| || ||||||||||| |||  |||| ||||||||| |||||||||| |||  ||||||||||||||||||| ||||||    
T  14860208 ggtggaacgaaaggtgcttgcaggcacattagcactctgattctcaactcagtaatggaactgagaaacagtttgtaagaagtgttgtgaaaagtgatgt 14860109  T
Q  270 gtac-------atgaagcaagttcacccttatatag 298  Q
    ||||        ||||||||||||||||||||||||    
T  14860108 gtaccttgagggtgaagcaagttcacccttatatag 14860073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 198 - 374
Target Start/End: Original strand, 12516195 - 12516380
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcaccc 290  Q
    |||||||||||| | |||||| ||||||| |||||||||||| || |||| |||||||||||||| |||| |||||        |||||||||||||||     
T  12516195 ttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtgatatgtaccttgagggtgaagcaagttcacct 12516294  T
Q  291 ttatatagacgtgtgttggccataatcgtttagg--ttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcct 374  Q
    ||||||||  |||  |||||||||| ||| |  |  ||||||||| ||| ||||| |||||||||||||||  |||||||||||||    
T  12516295 ttatataggtgtgccttggccataaccgtctccgccttatgcgacatgtgattagggacggagcaggacacgtgtagggtgatcct 12516380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 17143830 - 17143766
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||| | |||||||||||||| ||||||||||||||| |||  ||||||||||||||    
T  17143830 ttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 17143766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 9781572 - 9781514
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgt 271  Q
    |||| ||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||    
T  9781572 tcaaatcagtaatgtaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 9781514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 12252013 - 12252071
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgt 271  Q
    |||||||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||    
T  12252013 tcaagtcagtaacgaaaatgagaaagagtgtgtaagaattgttgtgaaaagtgatgtgt 12252071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 25495963 - 25496055
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatag 298  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||  |||| ||||||||||        ||||||||||||||||||||||||    
T  25495963 tcaagtcagtaatcaaactgagaaagagtgtgtaagaagagttgaaaaaagtgatgtgtaccttaaaggtgaagcaagttcacccttatatag 25496055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 12731642 - 12731570
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtg 270  Q
    |||| ||||||| | ||| |||| ||||| |||||||||||||||  |||||||||||||||||| |||||||    
T  12731642 ttagtactccgacgctcacgtcattaatggaactgagaaagagtgtataagaagtgttgtgaaaagtgatgtg 12731570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 1770803 - 1770904
Alignment:
Q  166 ttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatg 265  Q
    ||||||||||| |||| |||| |||| ||   |||| ||||||| | |||||| ||||||| ||||||| ||||||| |||  |||||||||||||| ||    
T  1770803 ttgcggtggaaggaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtg 1770902  T
Q  266 at 267  Q
    ||    
T  1770903 at 1770904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 28715551 - 28715505
Alignment:
Q  216 agtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||||    
T  28715551 agtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaa 28715505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 21649379 - 21649460
Alignment:
Q  155 ggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgaga 235  Q
    ||||||||||||| |||||||||||||| |||  |||| || | ||||||| || | | |||||||||||||| ||||||||    
T  21649379 ggcgatgagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcaccccaacgatcaagtcagtaatggaactgaga 21649460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 30606953 - 30607002
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| || |||||||||||| |||  ||||||||||||||    
T  30606953 tcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaa 30607002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 431397 - 431333
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||| ||| | |||||||| ||||| ||||||||||||||||||   ||||| ||||||||    
T  431397 ttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtgaaaa 431333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 20622502 - 20622573
Alignment:
Q  275 tgaagcaagttcacccttatatagacgtgtgttggccataatcg--tttaggttatgcgacgtgtaattaga 344  Q
    |||||||||||||||||||||||  | |||||||| ||||| ||  ||| ||||||| ||||||| ||||||    
T  20622502 tgaagcaagttcacccttatatatgcatgtgttgggcataaccgtctttgggttatgtgacgtgtgattaga 20622573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 215 - 375
Target Start/End: Original strand, 379743 - 379912
Alignment:
Q  215 aagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtgtt 307  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||        |||||||||||||||| ||||||| ||  ||||    
T  379743 aagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccgtatataggcgcatgtt 379842  T
Q  308 ggccataatcgtttagg--ttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcctc 375  Q
    || ||||| | | |  |  ||||||| ||||| ||||  |||||||||||||||  ||||||||||||||    
T  379843 ggtcataaccatctctgaattatgcggcgtgtgattatggacggagcaggacacgtgtagggtgatcctc 379912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 121092 - 121017
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac 273  Q
    |||| |||| |||| | |||||||||||| ||||||||||||||| |||  |||||||||||||| ||||||||||    
T  121092 ttagtactctgatgcttaagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgatgtgtac 121017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 21416733 - 21416816
Alignment:
Q  183 gtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatga 266  Q
    |||| ||||||| | |||||||||||| | |||||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  21416733 gtgtctgcatgctcgttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatga 21416816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 30477641 - 30477715
Alignment:
Q  188 tgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||| | |||||||||| | | |||||||||||| ||||||||||||||||| |||  ||||||||||||||    
T  30477641 tgcatgcacgttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaa 30477715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 24576709 - 24576589
Alignment:
Q  154 cggcgatgagtct-tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagt 252  Q
    |||||||||| || ||| ||||||||||| |||  |||| || | ||| ||||| || | |||||||||||||| |||| | || ||||| |||||||||    
T  24576709 cggcgatgagactctgcagtggaacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagt 24576610  T
Q  253 gttgtgaaaaatgatgtgtac 273  Q
    |||||||||| | ||||||||    
T  24576609 gttgtgaaaagtaatgtgtac 24576589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 4565505 - 4565368
Alignment:
Q  167 tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatga 266  Q
    ||||||||||||||| |||| |||| ||   ||||||||||||   |||||| |||||||||||||| | |||  |  |||||||||||||||||| ||     
T  4565505 tgcggtggaacgaaaggtgtctgcaggcatgttagcactccgacaatcaagttagtaatgaaactgaaagagaaagtataagaagtgttgtgaaaagtgt 4565406  T
Q  267 tgtgtac-------atgaagcaagttcacccttatata 297  Q
    |||||||        |||||||||||||||||||||||    
T  4565405 tgtgtaccttgagggtgaagcaagttcacccttatata 4565368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 13765004 - 13765059
Alignment:
Q  203 actccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtg 258  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||  ||||||||||    
T  13765004 actccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtg 13765059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 6928156 - 6928107
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| ||||||||||||||| |||  ||||||||||||||    
T  6928156 tcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 6928107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 13754783 - 13754828
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtg 258  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||    
T  13754783 tcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtg 13754828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 17319698 - 17319657
Alignment:
Q  200 agcactccgatgttcaagtcagtaatgaaactgagaaagagt 241  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  17319698 agcactctgatgttcaagtcagtaatggaactgagaaagagt 17319657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 24507435 - 24507531
Alignment:
Q  166 ttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||| ||||| |||| ||||||| | |||| ||||| | | |||||||| ||||| || ||||||||||||  ||  ||||||||||||||    
T  24507435 ttgcggtggagcgaaaggtgtctgcatgcacgttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaa 24507531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 26916964 - 26916915
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||| |||||||| |||||| |||  ||||||||||||||    
T  26916964 tcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaa 26916915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 17698350 - 17698302
Alignment:
Q  214 caagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  17698350 caagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaa 17698302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 24677668 - 24677608
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtg 258  Q
    |||||||||| ||| ||||||||||| || |||||||| |||  | |||||||||||||||    
T  24677668 ttagcactccaatgctcaagtcagtattggaactgagagagaaagtgtaagaagtgttgtg 24677608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 366
Target Start/End: Complemental strand, 6926 - 6764
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtg 305  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||| ||||||||||        |||| ||||||||||||| ||||| ||   |    
T  6926 tcaagtcagtattgaaactgagaacgagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacccttgtataggcgcacg 6827  T
Q  306 ttggccataatcgttt--aggttatgcgacgtgtaattagagacggagcaggacacaagtagg 366  Q
    |||||||||| ||| |  |||||||||| ||||| ||||| || ||| ||||||||| |||||    
T  6826 ttggccataaccgtctccaggttatgcggcgtgtgattagggatggatcaggacacatgtagg 6764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 298
Target Start/End: Complemental strand, 4533 - 4398
Alignment:
Q  170 ggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgt 269  Q
    |||||||||||| |||| |||| || | |||||||||| | | |||||||| |||||||||||| | |||| | |||||||||||| |||||||||||||    
T  4533 ggtggaacgaaaggtgtctgcaagcacgttagcactccaacgctcaagtcactaatgaaactgaaagagagagtgtaagaagtgttatgaaaaatgatgt 4434  T
Q  270 gtac-------atgaagcaagttcacccttatatag 298  Q
    ||||        ||||||||||||||||||||||||    
T  4433 gtaccttgagggtgaagcaagttcacccttatatag 4398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 315
Target Start/End: Complemental strand, 19050559 - 19050392
Alignment:
Q  156 gcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgt 254  Q
    ||||||||| || |||||||||||||| || ||||||  | | ||||||||| || | |||||||||||||  |||| |||||||| | |||||||||||    
T  19050559 gcgatgagtgttcgcggtggaacgaaaggtatttgcagacccgttagcactctgacgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgt 19050460  T
Q  255 tgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtgttggccataa 315  Q
    |||||||| ||||||||||        ||||| |||||||||||||||||| | || |||||||||||    
T  19050459 tgtgaaaagtgatgtgtaccctgagagtgaagtaagttcacccttatataggcttgcgttggccataa 19050392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 45714961 - 45715069
Alignment:
Q  155 ggcgatgagtcttgc-ggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtg 253  Q
    ||||||||||||| | |||||||||||| |||  |||| || | |||||||||| | | |||||||||||||||||||||||||||||| |||| |||||    
T  45714961 ggcgatgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtg 45715060  T
Q  254 ttgtgaaaa 262  Q
    | |||||||    
T  45715061 tggtgaaaa 45715069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 170 - 374
Target Start/End: Original strand, 15825136 - 15825349
Alignment:
Q  170 ggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgt 269  Q
    |||||||||||| |||| |||| || | ||||||||  || | ||||||| |||||| ||||||||||||||| |||  |||||||||||||| | ||||    
T  15825136 ggtggaacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtcatgt 15825235  T
Q  270 gtac-------atgaagcaagttcacccttatatagacgtgtgttggccataatcgt-ttag-gttatgcgacgtgtaattagagacggagcaggacaca 360  Q
    ||||        |||||||||||||||||| ||||| || | ||||| ||||| ||| || | |||||||| |||||  |||  ||||||| ||||||||    
T  15825236 gtaccttgagggtgaagcaagttcacccttgtataggcgcgcgttggtcataaccgtcttcgagttatgcggcgtgtgtttaaggacggagtaggacaca 15825335  T
Q  361 agtagggtgatcct 374  Q
     |||||||||||||    
T  15825336 tgtagggtgatcct 15825349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 380
Target Start/End: Original strand, 18135896 - 18136072
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtg 305  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||| |||| |||||| |||        |||||||||||||||||||||||| ||   |    
T  18135896 tcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaaagtgatgtatacctagaaggtgaagcaagttcacccttatataggcgcacg 18135995  T
Q  306 ttggccataatcgttt--aggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcctcgcgcg 380  Q
    |||||||  |  || |  | || ||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||    
T  18135996 ttggccactactgtctccacgtaatgcgacgtgtgattagggacggtgcaggacacatgtagggtgatccttgcgcg 18136072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 213 - 374
Target Start/End: Complemental strand, 15390651 - 15390481
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtacat-------gaagcaagttcacccttatatagacgtgtg 305  Q
    |||||| ||| ||| |||| | ||| |||| ||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||| || | |    
T  15390651 tcaagtaagtgatggaactaataaacagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcg 15390552  T
Q  306 ttggccataatcgttta--ggttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatcct 374  Q
    | |||||||| |||     |||||||||| |||| ||||| |||||||||||||||  |||||||||||||    
T  15390551 taggccataaccgtccccgggttatgcgatgtgtgattagggacggagcaggacacgtgtagggtgatcct 15390481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 10923162 - 10923059
Alignment:
Q  275 tgaagcaagttcacccttatatagacgtgtgttggccataatcgt-ttagg-ttatgcgacgtgtaattagagacggagcaggacacaagtagggtgatc 372  Q
    ||||||||||||||||||||||| ||||||||||| |||||  || || || ||||||| ||||| ||||||||||||  |||||||  |||||||||||    
T  10923162 tgaagcaagttcacccttatatacacgtgtgttggtcataacagtcttcggcttatgcggcgtgtgattagagacggaagaggacacgtgtagggtgatc 10923063  T
Q  373 ctcg 376  Q
    ||||    
T  10923062 ctcg 10923059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 298
Target Start/End: Original strand, 29710979 - 29711133
Alignment:
Q  150 acagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaag 248  Q
    |||||||||||| ||||| |||||||||| ||| |||| ||||||| | |||||||||| | | |||||||| ||||| || ||| | ||||||  || |    
T  29710979 acagcggcgatgcgtcttcgcggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaattgaaagagagtg--tacg 29711076  T
Q  249 aagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatag 298  Q
    |||||||||||||| ||||||||||        ||||||||||||||||||||||||    
T  29711077 aagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 29711133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 12168950 - 12169047
Alignment:
Q  166 ttgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatg-ttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||||||| |||| |||| || ||||| |||||| | | ||||||||||||||| |||| |||||||||| |||  ||||||||||||||    
T  12168950 ttgcggtggaacgaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaa 12169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 20120328 - 20120401
Alignment:
Q  169 cggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtg 242  Q
    ||||||||||||| |||| |||| || | ||||||||||||   ||||||||||||||||||||||||||||||    
T  20120328 cggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtg 20120401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 18770324 - 18770393
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgat 267  Q
    ||||||||| || | ||||||||||||||||| |||||||||||| |||  |||||||||||||| ||||    
T  18770324 ttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtgat 18770393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 29137847 - 29137971
Alignment:
Q  135 gtaacgacttccgacacagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactga 233  Q
    |||||| |||||| ||| ||| ||||||||| | | ||||||||||||  ||| |||| |  | ||||||| |||| | |||||||| ||||| ||||||    
T  29137847 gtaacggcttccggcacggcgacgatgagtcatcgaggtggaacgaaagatgtctgcaggtacgttagcacaccgacgctcaagtcattaatgcaactga 29137946  T
Q  234 gaaagagtgcgtaagaagtgttgtg 258  Q
    ||||||||| ||||||| |||||||    
T  29137947 gaaagagtgtgtaagaaatgttgtg 29137971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 36267466 - 36267572
Alignment:
Q  157 cgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgtt 255  Q
    ||||||||||| || |||||| |||| |||  |||||||   ||| |||||| | | |||||||||||||||||||||||||||||| |||  ||| |||    
T  36267466 cgatgagtcttcgcagtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggtt 36267565  T
Q  256 gtgaaaa 262  Q
    |||||||    
T  36267566 gtgaaaa 36267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 3586373 - 3586437
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||| ||||||| | |||||||||||||| |||||||||| |||| |||  ||||||||||||||    
T  3586373 ttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaa 3586437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 28426234 - 28426178
Alignment:
Q  167 tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagta 223  Q
    ||||||||||||||| |||  |||| || |||||||||||||||| |||||||||||    
T  28426234 tgcggtggaacgaaaggtgcctgcaggcacattagcactccgatgatcaagtcagta 28426178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 45258277 - 45258169
Alignment:
Q  155 ggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtg 253  Q
    ||||||||||||| ||||||||||||||  ||| |||| || | ||| |||||| | | |||||| |||||||||||| ||||||| || ||   |||||    
T  45258277 ggcgatgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtg 45258178  T
Q  254 ttgtgaaaa 262  Q
    |||||||||    
T  45258177 ttgtgaaaa 45258169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 12127744 - 12127680
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||| | | ||||||||||||||||||| |||| | ||| |||  ||||||||||||||    
T  12127744 ttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaa 12127680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 24499799 - 24499863
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||| | | |||||||||||||| || |||||||||||| |||  || |||||||||||    
T  24499799 ttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaa 24499863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 36267592 - 36267620
Alignment:
Q  275 tgaagcaagttcacccttatatagacgtg 303  Q
    |||||||||||||||||||||||||||||    
T  36267592 tgaagcaagttcacccttatatagacgtg 36267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 324 - 260
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  324 ttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 215297 - 215399
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatagacgtgtg 305  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||| || |||||||        ||||||||||||| |||||||||| ||||||    
T  215297 tcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcatccttatatagccgtgtg 215396  T
Q  306 ttg 308  Q
    |||    
T  215397 ttg 215399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 6281 - 6372
Alignment:
Q  171 gtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    ||||||| ||| ||||||||| || | |||||||| ||| | |||||||||||||| |||||||||| |||| |||  ||||||||||||||    
T  6281 gtggaacaaaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaa 6372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 8703 - 8594
Alignment:
Q  153 gcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaag 251  Q
    |||||| |||||||| |||||||||  ||| ||||||||| || | |||||||| ||| | ||||||||||||||||||||| ||| |||| |||  |||    
T  8703 gcggcgttgagtctttgcggtggaataaaaggtgtttgca-gcacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaag 8605  T
Q  252 tgttgtgaaaa 262  Q
    |||||||||||    
T  8604 tgttgtgaaaa 8594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 15511 - 15447
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||||||||| | || ||||||||||| ||||||||||||||   ||  ||||||||||||||    
T  15511 ttagcactccgacgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaa 15447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 13902 - 13993
Alignment:
Q  168 gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtga 259  Q
    ||||||| |||||| |||  || |||| | |||| ||||| | | |||||||||||||||||||||||||||||| |||  |||||||||||    
T  13902 gcggtgggacgaaaggtgcatgaatgcacgttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtga 13993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 10799 - 10756
Alignment:
Q  198 ttagcactccgatgttcaagtcagtaatgaaactgagaaagagt 241  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  10799 ttagcactccgacgttcaagtcagtaatggaactgagaaagagt 10756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 21763 - 21624
Alignment:
Q  135 gtaacgacttccgacacagcggcgatgagtct-tgcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactga 233  Q
    |||||||||||||  ||  ||||||||||||| ||| ||||||||||  |||  |||  || | |||||||||| |   ||||||||||| |||||||||    
T  21763 gtaacgacttccggtacgacggcgatgagtctctgcagtggaacgaagtgtgcctgcgggcacgttagcactccaacactcaagtcagtattgaaactga 21664  T
Q  234 gaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac 273  Q
     | ||||||  |||||||||||||| ||| ||||||||||    
T  21663 aagagagtgtttaagaagtgttgtggaaagtgatgtgtac 21624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 95876 - 95827
Alignment:
Q  213 tcaagtcagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 262  Q
    |||||| ||||||| |||||||||||||||||||  ||||||||||||||    
T  95876 tcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaa 95827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 35199 - 35328
Alignment:
Q  135 gtaacgacttccgacacagcggcgatgagtctt-gcggtggaacgaaacgtgtttgcatgcgcattagcactccgatgttcaagtcagtaatgaaactga 233  Q
    |||||| ||||||  || |||||| |||||||| |  ||| ||||||| ||| ||||| || | ||||||||| ||   |||||||||||| | ||||||    
T  35199 gtaacggcttccggtacggcggcgttgagtcttcgtagtgcaacgaaatgtgcttgcaggcacgttagcactctgacactcaagtcagtaacggaactga 35298  T
Q  234 gaaagagtgcgtaagaagtgttgtgaaaaa 263  Q
    ||||||||| ||   |||||||||||||||    
T  35299 gaaagagtgtgtggaaagtgttgtgaaaaa 35328  T

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