View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13870_low_1 (Length: 578)
Name: NF13870_low_1
Description: NF13870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13870_low_1 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 135 - 578
Target Start/End: Original strand, 34986023 - 34986466
Alignment:
| Q |
135 |
taggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagtttgcaatggaattatgtgctcagaacaccatatcagccg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986023 |
taggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagtttgcaatggaattatgtgctcagaacaccatatcagccg |
34986122 |
T |
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| Q |
235 |
catcaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgctccggttcattgacaatccgcttgttcaaagaga |
334 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34986123 |
caccaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgctccggttcattgacaatccacttgttcaaagaga |
34986222 |
T |
|
| Q |
335 |
aaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtacatgacacaccatataagc |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34986223 |
aaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtacatgacacgccatataagc |
34986322 |
T |
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| Q |
435 |
tgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcag |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986323 |
tgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcag |
34986422 |
T |
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| Q |
535 |
catgagttttaatctatgatcctagctctttagcttccactttg |
578 |
Q |
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| T |
34986423 |
catgagttttaatctatgatcctagctctttagcttccactttg |
34986466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 103 - 578
Target Start/End: Original strand, 34992809 - 34993282
Alignment:
| Q |
103 |
tggtgacggtggagttcagcgcacattaga-gttaggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagtttgcaa |
201 |
Q |
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|||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34992809 |
tggtgatggtggagtcgaacgcacattagaagttaggaactggaatgcctacaatttggctctgcagaatcagagcacttaaattgccttcagtttgcaa |
34992908 |
T |
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| Q |
202 |
tggaattatgtgctcagaacaccatatcagccgcatcaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgct |
301 |
Q |
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| T |
34992909 |
tggaattatgtgctcagaacaccatatcagccgcaccaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgct |
34993008 |
T |
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| Q |
302 |
ccggttcattgacaatccgcttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaag |
401 |
Q |
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| T |
34993009 |
ccggttcattgacaat-cacttgttcaatgagcaaacattaagagaagaagcagaccacacccttctcgtccggttacaatccataaaattaaccgggag |
34993107 |
T |
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| Q |
402 |
cctaatcaatcgtacatgacacaccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaataactatg |
501 |
Q |
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||||||||| ||||| || || ||| ||||| ||||||| |||||| | ||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
34993108 |
tctaatcaattgtacaagatacgccacataaggtgaacataacgtgaga-tggtcttgagattccaaagtttggaccatatgttctatttaat-actatg |
34993205 |
T |
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| Q |
502 |
agttacacatagtttttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttg |
578 |
Q |
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| T |
34993206 |
agttgcacatagtttttgtccttgtaaaatcagcatgagttttaatctatggtcctagctctttagcatccactttg |
34993282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 34978155 - 34978373
Alignment:
| Q |
18 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactatactacacttttacaggttttaaatcatcctggtgacggtggagt |
117 |
Q |
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| T |
34978155 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactataccacacttttacaggttttaaatcatcctggtgacggtggagt |
34978254 |
T |
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| Q |
118 |
tcagcgcacattagagttaggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagtttgcaatggaattatgtgctca |
217 |
Q |
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| T |
34978255 |
tcagcgcacattagagttgggaactggaatgcctacaatttggctctgcagaatcagagcacttaaattgccttcagtttgcaatggaattatgcgctca |
34978354 |
T |
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| Q |
218 |
gaacaccatatcagccgca |
236 |
Q |
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| T |
34978355 |
gaacaccatatcagccgca |
34978373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 34986610 - 34986669
Alignment:
| Q |
33 |
tgagttgacggcatcattttcgtatcaatgctttgtactatactacacttttacaggttt |
92 |
Q |
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| T |
34986610 |
tgagttgacggtatcattttcgtatcaatgctttgtactatgctacacttttacaggttt |
34986669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 34985296 - 34985365
Alignment:
| Q |
18 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactatactacacttttaca |
87 |
Q |
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| T |
34985296 |
atctacctggtttattgagttgatggcgtcattttcgtatcaacgctctgtactatgctacacttttaca |
34985365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 34986511 - 34986563
Alignment:
| Q |
494 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
546 |
Q |
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| T |
34986511 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagatttaa |
34986563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 516 - 578
Target Start/End: Original strand, 19326104 - 19326167
Alignment:
| Q |
516 |
tttgtccttgtaaaa-tcagcatgagttttaatctatgatcctagctctttagcttccactttg |
578 |
Q |
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| T |
19326104 |
tttgtccttgtaaaaatcaccatgagttttaatctatagtcctagctctttagcttcctctttg |
19326167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 34992059 - 34992120
Alignment:
| Q |
18 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactatactaca |
79 |
Q |
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| T |
34992059 |
atctacctggtttattaggttgacgatatcatttccgtatcaatgctttgtgctatgctaca |
34992120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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