View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13870_low_3 (Length: 323)
Name: NF13870_low_3
Description: NF13870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13870_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 5469337 - 5469612
Alignment:
| Q |
22 |
acagacactagatctgcacccaaaatcttaaggtaatatgtatatgagtacctatct-acatccaacattgaccattcatttatagtcgatgttgaatta |
120 |
Q |
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| T |
5469337 |
acagacactggatatgcacccaaaatcataaggtaat--------gagtacctatcttacatccaacattgaccattcatttatagtcgatgttgaatta |
5469428 |
T |
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| Q |
121 |
accactcacacttgaattcaacaatccaannnnnnnttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
220 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5469429 |
accactcacacttgtattcaacaatccaacccccccttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
5469528 |
T |
|
| Q |
221 |
cctcaagtgagtcttctacatcttatatttgatctaacaccatgatctacttccactctccgaccaagttgaagcaagccctta |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5469529 |
cctcaagtgagtcttctacatcttatacttgatctaacaccatgatctacttccactctccggccaagttgaagcaagccctta |
5469612 |
T |
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