View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13870_low_4 (Length: 315)
Name: NF13870_low_4
Description: NF13870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13870_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 20929577 - 20929288
Alignment:
| Q |
18 |
acatgaatgatttgtcactctctgatttgttactcttttttaacgatactgtttatggcttcctatgcttgcttgtttctaagcttgttctaagatcaaa |
117 |
Q |
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| T |
20929577 |
acatgaatgatttgtcactctctgatttgttactcttttttaactatactgtttatggcttcctatgcttgcttgtttctaagcttgttctaagatcaaa |
20929478 |
T |
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| Q |
118 |
gatccttttttaaacaattgtttgttttgcttgtggtagatatcagaatggatgagcaatgaaagaaaccttcatttattatcaggagatattgcgacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20929477 |
gatccttttttaaacaattgtttgttttgcttgtggtagatatcagaatggatgagcaatgaaagaaaccttcatttattatcaggagatattgcgacac |
20929378 |
T |
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| Q |
218 |
gtctcgacttgatagctaaagtccacggtctggatcaagcagagaaatattttaacagcgttccacacacttcaaaagatttcaaggtct |
307 |
Q |
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| T |
20929377 |
gtctcgacttgatagctaaagtccacggtctagatcaagcagagaaatattttaacagtgttccacacacttcaaaagatttcaaggtct |
20929288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 91 - 307
Target Start/End: Original strand, 23499440 - 23499652
Alignment:
| Q |
91 |
tgtttctaagcttgttctaagatcaaagatccttttttaaacaattgtttgttttgcttgtggtagatatcagaatggatgagcaatgaaagaaaccttc |
190 |
Q |
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||||| ||||||||||||||| ||||||| ||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23499440 |
tgtttttaagcttgttctaagctcaaagaacctattttaagaa----tttgttttgcttgtgctagatatcagaatggatgagcaatgaaagaaaccttc |
23499535 |
T |
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| Q |
191 |
atttattatcaggagatattgcgacacgtctcgacttgatagctaaagtccacggtctggatcaagcagagaaatattttaacagcgttccacacacttc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||| ||||||||||| || |
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| T |
23499536 |
atttattatcaggagatattgcgacacgtctcgacttgataggtaaagtccgcggtctagatcaagcagtgaaatattttaacagtgttccacacacatc |
23499635 |
T |
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| Q |
291 |
aaaagatttcaaggtct |
307 |
Q |
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||||||||||||||||| |
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| T |
23499636 |
aaaagatttcaaggtct |
23499652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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