View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13870_low_5 (Length: 220)
Name: NF13870_low_5
Description: NF13870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13870_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 27765957 - 27766105
Alignment:
| Q |
54 |
aagatatctaaaagtcaacacgttctcttccaataagaaaacggtatcaaacttcaacaacaagaagaaaaacacactttacaacaaagctaagaaagtg |
153 |
Q |
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| T |
27765957 |
aagatatctaaaagtcaacacgttctcttccaataagaaaacggtatcaaacttcaacaacaacaagaaaaacacactttacaacaaagctaagaaagta |
27766056 |
T |
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| Q |
154 |
gcaacaatggcgaaaaactgcttcaacctcaaaacgatgacgtattcct |
202 |
Q |
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| T |
27766057 |
gcaacaatggcgaaaaactgcttcaacctcaaaacgatgacgtattcct |
27766105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 27755383 - 27755443
Alignment:
| Q |
140 |
aagctaagaaagtggcaacaatggcgaaaaactgcttcaacctcaaaacgatgacgtattc |
200 |
Q |
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| T |
27755383 |
aagctaagaaagtagcaacaatgtcaaaaaactgcttcaacctcaaaacaatgacgtattc |
27755443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 27765914 - 27765949
Alignment:
| Q |
25 |
cagcatagagtgcttgaacgattggatcgaagatat |
60 |
Q |
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| T |
27765914 |
cagcatagagtgcttgaacgattggatcgaagatat |
27765949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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