View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13871_high_3 (Length: 300)
Name: NF13871_high_3
Description: NF13871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13871_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 40293097 - 40292817
Alignment:
| Q |
1 |
caagtatgtacttatctccacaatctgctgttactttctgccattccatctctaatgttttataataattatcgttgttatttttgtacagggatgcaga |
100 |
Q |
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| T |
40293097 |
caagtatgtacttatctccacaatctgctgttactttctgccattccatctctaatgttttataataattattgttgttatttttgtacagggatgcaga |
40292998 |
T |
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| Q |
101 |
aattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgtatgtttcttttttaagggattcaaactttctatactactattaatttatt |
200 |
Q |
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| T |
40292997 |
aattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgtatgtttcttttttaagggattcaaactttctatactactattaatttatt |
40292898 |
T |
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| Q |
201 |
gcaaaaacagtgcccataagataagacaatgacccctttgatatatattccaattagcagtaacataactgatgtaagttt |
281 |
Q |
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| T |
40292897 |
gcaaaaacagtgcccctaagataagacaatgacccctttgatatatattccaattagcagtaacataactgatgtaagttt |
40292817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 40266955 - 40266886
Alignment:
| Q |
81 |
tttttgtacagggatgcagaaattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgt |
150 |
Q |
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| T |
40266955 |
tttttttataggaatgcagaaattcttaaatctgttacccaggtcaataagttgatggacataggcatgt |
40266886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 40259131 - 40259087
Alignment:
| Q |
102 |
attcttaaatctgttacccgggtcaatcagctgaaggacctaggt |
146 |
Q |
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| T |
40259131 |
attcttaaatctgttaaccgggttaatcagctgagggagctaggt |
40259087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 37531660 - 37531599
Alignment:
| Q |
89 |
cagggatgcagaaattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgt |
150 |
Q |
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| T |
37531660 |
cagggatgcggaaattcttaaatctgtgacccgggtcaatcagttaaaggagctaggtatgt |
37531599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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