View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13871_low_1 (Length: 512)
Name: NF13871_low_1
Description: NF13871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13871_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 5 - 498
Target Start/End: Original strand, 6827588 - 6828092
Alignment:
| Q |
5 |
cataggcgaagaattgaggagacatggaggattgaagaaattgattttaacatttgtggcttgtcaatggattgttttttgcctccctctgatatcaaga |
104 |
Q |
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| T |
6827588 |
cataggcgaagaattgaggagacatggaggattgaagaaattgattttaacatttgtggcttgtcaatggattgttttttgcctccctctgatatcaaga |
6827687 |
T |
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| Q |
105 |
aggaacatgaggctgtagagcaaattgtgtagtaggaaagagtttggattttccttagctttttcgatcttttttgtcaatcgtaagacaaattttgtac |
204 |
Q |
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| T |
6827688 |
aggaacatgaggctgtagagcaaattgtgtagtaggaaagagtttggattttccttacctttttcaatcttttttgtcaaccgtaagacaaattttgtac |
6827787 |
T |
|
| Q |
205 |
atatgg--------tatagaagcaaatcatagctgaatacgaaaatatttctctaggtctttggttcgatgtttagcacnnnnnnnnacgaggcatttta |
296 |
Q |
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| T |
6827788 |
atatggtatagaactatagaagcaaatcatagctgaatacgaaaatatttctctaggtctttggttcgatgtttagcacttttttttacgaggcatttta |
6827887 |
T |
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| Q |
297 |
ggactttgttgtcaaatcgaaaagaatgttaaacttcataaacaaggcaaagattatcaatatcttagcaaagaatgt---tatgattgattgccattgc |
393 |
Q |
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| T |
6827888 |
ggactttgttgtcaaatcgaaaagaatgttaaacttcataaacaaggcaaagattatcaatattttatcaaagaatgttagtatgattgattgccattgc |
6827987 |
T |
|
| Q |
394 |
atttaaggagtctgggtgagaattctaaccaattgttggtcaagtgataagcatcttaacacaatagaaggaaatatgaagaatacaacaagatttggaa |
493 |
Q |
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| T |
6827988 |
atttaaggagtttgggtgagaattctaaccaattgttggtcaagtgataagcatcttaacacaatagaaggaaatatggagaacacaacaagatttggaa |
6828087 |
T |
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| Q |
494 |
gctac |
498 |
Q |
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| T |
6828088 |
gctac |
6828092 |
T |
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Back To:
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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 52297292 - 52297356
Alignment:
| Q |
17 |
attgaggagacatggaggattgaagaaattgattttaacatttgtggcttgtcaatggattgttt |
81 |
Q |
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| T |
52297292 |
attgaggaaatatggagtattgaagaagttgattttaacatttttggattgtctatggattgttt |
52297356 |
T |
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