View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13871_low_2 (Length: 426)
Name: NF13871_low_2
Description: NF13871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13871_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 165 - 364
Target Start/End: Original strand, 8138621 - 8138820
Alignment:
| Q |
165 |
ttatgagacaaatttatcgatctattttttaaaattttaagcacatacacaattcttattaacaagaattaaatttctctctattttggttgagcagata |
264 |
Q |
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| T |
8138621 |
ttatgagacaaatttatcgatctattttttaaaattttaagcacatacatagttcttattaacaagaattaaatttctctctattttggttgagcagata |
8138720 |
T |
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| Q |
265 |
agatttgggaccatagcagtggtaatgtaggagctgatttttatcatcgatacaaggtacacagttgctgaaaaatttaataatttgtcttgtttcttcg |
364 |
Q |
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| T |
8138721 |
agatttgggaccatagcagtggtaatgtaggagctgatttttatcatcgatacaaggtacacagttgctgaaaaatttaataatttgtcttgtttcttcg |
8138820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 8138504 - 8138602
Alignment:
| Q |
77 |
gtgcaaataatgtgagattgcatgtttgaactcccgatcttgcatacgtatcaaatgtttatgtaaccatttttctatttgggttgtattatgagacaa |
175 |
Q |
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| T |
8138504 |
gtgcaaataatgtgagattgcatgtttgaactcccgatcttgcatacgtatcaaatgtttatttagccattttcctatttgggttgtattatgagacaa |
8138602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 8162740 - 8162823
Alignment:
| Q |
240 |
tctctctattttggttgagcagataagatttgggaccatagcagtggtaatgtaggagctgatttttatcatcgatacaaggta |
323 |
Q |
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| T |
8162740 |
tctctctctcttgattgagcagaaaagattggggaccatagcagtggtaatattggagctgatttttatcatcgatacaaggta |
8162823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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