View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13872_high_3 (Length: 208)
Name: NF13872_high_3
Description: NF13872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13872_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 34125405 - 34125588
Alignment:
| Q |
12 |
atattatactctagtaataaagaaatactccataataattgattnnnnnnnnnncttctataacatattataccaaatttaagctatcttaaagtgatga |
111 |
Q |
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| T |
34125405 |
atattttactctagtaataaaaaaatactccataataattgattaaaaaaaac-cttctataacatattataccaactttaagctatcttaaagtgatga |
34125503 |
T |
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| Q |
112 |
atttggatattctccacannnnnnnnnnnnaaagtgtcgctctttttattgataagaaacttgccccaattgaaaggtttatatt |
196 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34125504 |
atttggatattctccacatttttcttttttaaagtgtcgctctttttattgataagaaacttgccccaattgaaaggtttatatt |
34125588 |
T |
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