View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13872_low_1 (Length: 592)
Name: NF13872_low_1
Description: NF13872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13872_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 399 - 586
Target Start/End: Original strand, 52548586 - 52548787
Alignment:
| Q |
399 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaa--------------catacaataagctaacatagagctcaatatg |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52548586 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaatctaatgtaggttacatacaataagctaacatagagctcaatatg |
52548685 |
T |
|
| Q |
485 |
cgtatataagtatcttatactcttctaattcaggaatgagaaatcaatttcctttctctttcctttgttcataatagttatactagttagttattcatct |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52548686 |
cgtatataagtatcttatactcttctaattcagtaatgagaaatcaatttcctttctctttcctttgttcataatagttatactagttagttattcttct |
52548785 |
T |
|
| Q |
585 |
ca |
586 |
Q |
| |
|
|| |
|
|
| T |
52548786 |
ca |
52548787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 26619328 - 26619274
Alignment:
| Q |
399 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaa |
453 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
26619328 |
gttagaaatgattacttaatcattgcatagctttgagtttgttatgtgttagcaa |
26619274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 26619255 - 26619219
Alignment:
| Q |
458 |
caataagctaacatagagctcaatatgcgtatataag |
494 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
26619255 |
caataagctatcatagagttcaatatgcgtatataag |
26619219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 17126923 - 17126794
Alignment:
| Q |
33 |
tttacctcaagattttttccaggccatgttactatgggatcaacagacaataaagctggttcacatagcttaattgccttatgtaattcattcaaatgcc |
132 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | ||||||||||||| |||||||| || ||| |||| ||||| |||||||| || | | ||||| |
|
|
| T |
17126923 |
tttacctcaaggttttttccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttagatgcc |
17126824 |
T |
|
| Q |
133 |
cccattttggctggtttaaaagtcctgata |
162 |
Q |
| |
|
|||||||||| | ||| ||||||||||| |
|
|
| T |
17126823 |
cccattttggttcacttataagtcctgata |
17126794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University