View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13872_low_2 (Length: 555)
Name: NF13872_low_2
Description: NF13872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13872_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 61 - 537
Target Start/End: Complemental strand, 12693149 - 12692673
Alignment:
| Q |
61 |
ctccataaaatgtgtatcaaattacggctataaatagaaagttctgccctccaagatattcatgcacattcagtcctaaagaatcactgcactcaaaccc |
160 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12693149 |
ctccatagaatgtgtatcaaattacggctataaatagaaagttctgccctccaagatattcatgcacattcagtcccaaagaatcactgcactcaaaccc |
12693050 |
T |
|
| Q |
161 |
taatcttcttcttaaacctatgccgtcaatggaatactacaaggtattgaatgtggatcaagatgcaaccgaacaagagttgataattgccttnnnnnnn |
260 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12693049 |
tattcttcttcttaaacctatgccgtcaatggaatactacaaggtattaaatgtggatcaagatgcaaccgaacaagagttgataattgccttaaaaaaa |
12692950 |
T |
|
| Q |
261 |
tttgcttttgcttatcacccggatagaaaccgtggaaatgaagaagaagccgaaagaaaattcaagtttggttacaatgcttatgaagttttaatagatc |
360 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692949 |
tttgcttttgcttatcacccagatagaaaccgtggaaatgaagaagaagccgaaagaaaattcaagtttggttacaatgcttatgaagttttaatagatc |
12692850 |
T |
|
| Q |
361 |
ccgagaagcgtaggatctatgacgaatatggcgaggaagggcttcaatttggttggacccctccacggcgtcagaaccattcatcatctaactcatctcc |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692849 |
ccgagaagcgtaggatctatgacgaatatggcgaggaagggcttcaatttggttggacccctccacggcgtcagaaccattcatcatctaactcatctcc |
12692750 |
T |
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| Q |
461 |
atcgtctgctccttcttctcgtcagtcaaaaagcaccaattcatcatcttcgtcttcatcgtcctcctcttcatctc |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12692749 |
atcgtctgctccttcttctcgtcagtcaaaaagcaccaattcatcatcttcgtcttcatcgtcctcctcttcttctc |
12692673 |
T |
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