View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13872_low_4 (Length: 332)
Name: NF13872_low_4
Description: NF13872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13872_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 25784193 - 25784333
Alignment:
| Q |
176 |
tttctagctgaccacaactcctcccaactgcgttgtgacaaatcttttccatataagcgcaattagagaaggtattggtcattcgaatggagcgccagag |
275 |
Q |
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| T |
25784193 |
tttctagctgaccacaactcctcccaactgcgttgtgacaaatcttttccatataagcgcgattagagcaggtatcggtcattcgaatggagcgccacat |
25784292 |
T |
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| Q |
276 |
gaaaggatctttacatatattccaccatagagggcacactt |
316 |
Q |
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| T |
25784293 |
gaaaggatctttacatatattccaccatagagggcacactt |
25784333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 14934305 - 14934437
Alignment:
| Q |
89 |
aaagcaagagaaaagagtatgaagtaaattaccaatcagctatgtattgaaggagatcatcagttgcaaaatacttgatattaatattttctagctgacc |
188 |
Q |
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| T |
14934305 |
aaagcaagaaaaaagattatgaaattatttacctatcagctatgtatgcaagaagatcatcagttccaatgtagtcgatagcaatgtcttccagctgacc |
14934404 |
T |
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| Q |
189 |
acaactcctcccaactgcgttgtgacaaatctt |
221 |
Q |
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| T |
14934405 |
acaacttcgcgcaactgcattgcgacaaatctt |
14934437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 26023121 - 26023153
Alignment:
| Q |
128 |
ctatgtattgaaggagatcatcagttgcaaaat |
160 |
Q |
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| T |
26023121 |
ctatgtattgaaggagatcatcagttccaaaat |
26023153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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