View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13872_low_5 (Length: 222)
Name: NF13872_low_5
Description: NF13872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13872_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 13228037 - 13227847
Alignment:
| Q |
13 |
aaaataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatag |
112 |
Q |
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| T |
13228037 |
aaaataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgtttcgatag |
13227938 |
T |
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| Q |
113 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
203 |
Q |
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| T |
13227937 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
13227847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 53883670 - 53883735
Alignment:
| Q |
132 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
203 |
Q |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatag |
53883735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 47522823 - 47522633
Alignment:
| Q |
13 |
aaaataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatag |
112 |
Q |
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| T |
47522823 |
aaaataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgtttcgataa |
47522724 |
T |
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| Q |
113 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
203 |
Q |
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| T |
47522723 |
atatatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatag |
47522633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 42680336 - 42680179
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
139 |
Q |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
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| Q |
140 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
203 |
Q |
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| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatag |
42680179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
138 |
Q |
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||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
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| Q |
139 |
tctattgattcttttccaattat |
161 |
Q |
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| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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