View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13873_high_1 (Length: 685)

Name: NF13873_high_1
Description: NF13873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13873_high_1
NF13873_high_1
[»] chr6 (1 HSPs)
chr6 (1-664)||(5744026-5744687)


Alignment Details
Target: chr6 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 664
Target Start/End: Original strand, 5744026 - 5744687
Alignment:
Q  1 atattctatatacacaacagaaatgtgtacattattctcgcctcaatatgcgaatgcacgagaattctactattttgtgctnnnnnnnncatgcaacact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||    
T  5744026 atattctatatacacaacagaaatgtgtacattattctcgcctcaatatgcgaatgcacgagaattttactattttgtgctaaaaaaaacatgcaacact 5744125  T
Q  101 tacgcatacatatgtgtatgcatgaacctcacatgatacaaactaaatttcatgtgccttatgttaccatcctttgaagatctcttctataagtagagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5744126 tacgcatacatatgtgtatgcatgaacctcacatgatacaaactaaatttcatgtgccttatgttaccatcctttgaagatctcttctataagtagagca 5744225  T
Q  201 agagagaaataggttatatattgataaatactctcatctttccaatttttccttctaggattttattatctattgaaaatgacaatgaaacacatgattt 300  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||    
T  5744226 agagagaaatagtttatatattgatacatactctcatctttccaatttttccttctagtgttttattatctattgaaaatgacaatgaaacaaatgattt 5744325  T
Q  301 ttgttatgtttttctcattcttttcccttaacctcgtctccccaatctttacccttccccttgcacccgcattatatgtttttggggactccctattaga 400  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5744326 ttgttatgtttttctcattcttttcccttaacctcctctccccaatctttacccttccccttgcacccgcattatatgtttttggggactccctattaga 5744425  T
Q  401 caatggaaataataattttcttccaactttagcgagagcaaatttcttaccttatggagttgatttccctagaggtccaacgggaagattttccaatggc 500  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5744426 caatggcaataataattttcttccaactttagcgagagcaaatttcttaccttatggagttgatttccctagaggtccaacgggaagattttccaatggc 5744525  T
Q  501 agaaccgttgctgattttttgggtacctaatttctgttattagctttagagtataaattaagtaatgtgataattttttatgagaaaatcaaccatagtt 600  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |  | |    |   |    
T  5744526 agaaccgttgccgattttttgggtacctaatttctgttattagctttagagtataaattaagtaatgtgataattttt--tgggtacctaa---tttcct 5744620  T
Q  601 aaggcttaaa-ttttttatttgtagtattctaaagtgaatt--tctcaatttgagaagcgaaatcaa 664  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  5744621 aaggcttaaatttttttatttgtagtattctaaagtgaatttatctcaatttgagaagcgaaatcaa 5744687  T

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