View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13873_low_2 (Length: 369)
Name: NF13873_low_2
Description: NF13873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13873_low_2 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 34917120 - 34916758
Alignment:
| Q |
7 |
ggacatcatcaaaatcacaagttggtaccaaacactgatcattgggaaaaaattgttcagtttgttgagactgagaggatattgttgtgcttctgttggt |
106 |
Q |
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| T |
34917120 |
ggacatcatcaaaatcacaagttggtaccaaacactgatcattgggaaaaaattgttcagtttgttgagactgagaggatattgttgtgcttctgttggt |
34917021 |
T |
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| Q |
107 |
tttgttctttatagcattagctgaaggttttcttctataatctttcggagggttttcgtctaggtttaagctcttgatatatttttgtagaagagttcct |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34917020 |
tttgttttttatagcattagctgaaggttttcttctataatctttcggaggattttcgtctaggtttaagctcttgatatatttttgtagaagagttcct |
34916921 |
T |
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| Q |
207 |
ttagggtactttgatctaccctttcttttggagtattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916920 |
ttagggtactttgatctaccctttcttttggagtattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttt |
34916821 |
T |
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| Q |
307 |
tagctatctctgcccatttgtttcctatctcttcatgtgctttgatcaatatgttgtcctctt |
369 |
Q |
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| T |
34916820 |
tagctatctctgcccatttgtttcctatctcttcatgtgctttgatcaatatgttgtcctctt |
34916758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 358
Target Start/End: Original strand, 21549591 - 21549721
Alignment:
| Q |
228 |
tttcttttggagtattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttttagctatctctgcccatttgt |
327 |
Q |
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| T |
21549591 |
tttctttttgaatattctcttctctttgttgcataccaatggtttttaattgagttttcagttctcccaggtaaccttttggcaatctttacccatttgt |
21549690 |
T |
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| Q |
328 |
ttcctatctcttcatgtgctttgatcaatat |
358 |
Q |
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|||| | |||||||| ||||| |||||||| |
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| T |
21549691 |
ttcccaattcttcatgagctttcatcaatat |
21549721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 21549495 - 21549574
Alignment:
| Q |
123 |
ttagctgaaggttttcttctataatctttcggagggttttcgtctaggtttaagctcttgatatatttttgtagaagagt |
202 |
Q |
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| T |
21549495 |
ttagttgaagattttcttgtatactcttttgggggatttttgtctaagttcaagctcttgatatattcttgtagaagagt |
21549574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 29671209 - 29671265
Alignment:
| Q |
242 |
ttgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctgg |
298 |
Q |
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| T |
29671209 |
ttgtcttctttttgtggcattccaatgattttttatggcattttcagttcttcctgg |
29671265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 369
Target Start/End: Complemental strand, 43866587 - 43866447
Alignment:
| Q |
229 |
ttcttttggagtattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttttagctatctctgcccatttgtt |
328 |
Q |
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| T |
43866587 |
ttcttttggaatattgccttctctttgttgcattccaatggttttttattgcattctcagttcttcctggcaatcttttcgcaatctccgcccacttatt |
43866488 |
T |
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| Q |
329 |
tcctatctcttcatgtgctttgatcaatatgttgtcctctt |
369 |
Q |
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| T |
43866487 |
tcctatctctgtatgagcttggatcaatatcttatcctctt |
43866447 |
T |
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